Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20musarum_20[genbank_20GCA_5F001513885.1_202016-01-13] 541 sequences; 28,417,647 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq3 163 4e-36 seq514 120 5e-23 >seq3 Length=94568 Score = 163 bits (180), Expect = 4e-36 Identities = 199/269 (74%), Gaps = 2/269 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| ||| ||| || || |||||||| || ||||||||||| |||| Sbjct 73461 CGCCAAGCGTCACCGCAAGAT-TCTCCGCGACAACATCCAGGGTATCACCAAGCCCGCTA 73519 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| ||||| |||||||||||||| ||||||||| | || | || | || || |||| Sbjct 73520 TCCGCCGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATTTCCGCCATGATTTACGAGGAGA 73579 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 |||| |||| | ||| ||||| || || |||| ||| || || ||| || | Sbjct 73580 CCCGTGGTGTTCTCAAGTCGTTCCTGGAGGGTGTCATCCGTGACGCCGTCACCTACACTG 73639 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 |||||||||| || ||||| ||||| || |||| | ||||| || | || | |||| Sbjct 73640 AGCACGCTAAGCGCAAGACCGTCACTTCGCTGGACGTTGTCTACGCTCTCAAGAGACAAG 73699 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | | || ||||| || ||||| Sbjct 73700 GCCGCACCCTGTACGGTTTCGGTGGTTAA 73728 >seq514 Length=113769 Score = 120 bits (132), Expect = 5e-23 Identities = 88/100 (88%), Gaps = 2/100 (2%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 |||||||||||| |||| ||| |||||| || ||||| || || ||||||||||| || | Sbjct 35350 CGCTAAGCGTCACCGCAAGAT-TCTTCGCGACAACATTCAGGGTATCACCAAGCCTGCCA 35292 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||||||||||||||||||||||||| ||||||||| |||| Sbjct 35291 TCCGTCGTCTGGCTCGTCGTGGTGGTGTCAAGCGTATCTC 35252 Score = 89.7 bits (98), Expect = 8e-14 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595 || |||| || |||| ||||| ||| ||||| |||||| || ||| |||| |||| Sbjct 35186 TGATCTACGAGGAGACTCGTGGTGTGCTGAAGTCCTTCCTGGAGGGCGTCATCCGCGATG 35127 Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655 | || ||| ||||||||||| || || ||||| |||||||| | || | ||||| | Sbjct 35126 CCGTCACCTACACCGAGCACGCCAAGCGCAAGACCGTCACCTCGCTCGACGTTGTCTACG 35067 Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | |||| || || ||||| | | || ||||| || ||||| Sbjct 35066 CCCTGAAGCGCCAGGGCCGCACCCTGTACGGTTTCGGTGGTTAA 35023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074705359913