Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20musarum_20[genbank_20GCA_5F001513885.1_202016-01-13] 541 sequences; 28,417,647 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq90 136 5e-27 seq21 131 2e-25 >seq90 Length=200924 Score = 136 bits (150), Expect = 5e-27 Identities = 367/557 (66%), Gaps = 6/557 (1%) Strand=Plus/Minus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || || || ||| |||||| || ||||| | ||| || ||||||||||| || || Sbjct 194424 CAGGCAAAGTCGGTGTGCAGGCCTTCGTCGCGCGAAATCAGCTCGTTGGAAAAGGTCAGA 194365 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 |||||||| || |||||||| ||||| || ||||| || || | || || |||||| Sbjct 194364 CCGGGCATCAGACCACGCTTGCGCAGCCAGAAAATGGAGGCAAAGGCGCCCGAGAAGAAG 194305 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA-ACCG--GCGCTGTCATGT 33480 || || || || || |||||||| | || | || || | || ||| || Sbjct 194304 ATGCCCTCGACGGCGGCAAAGGCCACCAGACGCTGGGCAAAGGTCGACTCGCGATCGGAA 194245 Query 33481 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33540 |||||||| | ||||| |||||||| | || || || || || ||||| || Sbjct 194244 ATCCACTTGAGGGCCCAGTCGGCCTTGCGGCGGATGCAGGGAATGGTGTCGATGGCGTTG 194185 Query 33541 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33600 || || ||| | | | || || | || || ||||| | || ||| | Sbjct 194184 AACAGGTAGCTGCGCTGGGCAGGCTCCTTGATGTACGTGTCGATGAGCAGCGAGTACGTC 194125 Query 33601 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33660 ||||| || ||||| || || ||||| || |||||||| || | ||||||| ||| Sbjct 194124 TCCGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGGGCCTCGGGGATC 194065 Query 33661 TGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCA 33720 || || || | || || || ||| || || || || || ||||| ||| ||| Sbjct 194064 TGGACCTCGCCCGAGAAACGCTCAACCAGGTTCTCGTTGACAATGCCGTCCGAGGCAGCA 194005 Query 33721 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGT-CTGGT--GTTAGTTTATTCCAA 33777 ||||| |||| || || || ||||| || || | || || | | || ||||| Sbjct 194004 AAAAAGGCCAGGACGTGCGAGATGAAATACTTCTCATCCTTGTTCATGCGGTTGTTCCAG 193945 Query 33778 TCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 33837 || | || ||| || || | ||| | || || | ||||| || || ||||| ||||| Sbjct 193944 TCGTGGAGATCCTTGGACAGATCAATCTCCTCGGCCGTCCAGAAAGACGCCTCGGCCTTC 193885 Query 33838 TTATACATGTTCCAGAT 33854 || ||||| | |||||| Sbjct 193884 TTGTACATCTGCCAGAT 193868 >seq21 Length=78807 Score = 131 bits (144), Expect = 2e-25 Identities = 452/701 (64%), Gaps = 18/701 (3%) Strand=Plus/Minus Query 63168 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 63227 ||||| || || | || ||||||| | ||| || || | || || || ||||| Sbjct 61390 CCAGGGCACTCGTTGGGGCACATCAGAGTCCAGTCCGAGTTCTTCTCAACACGCTTCATG 61331 Query 63228 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 63287 ||||| ||||| ||||| || || | || || || | || | ||||| || || Sbjct 61330 AAGAGGTCAGGGATCCACAGCGCCAGGAAAAGGTCACGGGCGCGGACCTCCTCCTTGCCG 61271 Query 63288 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 63347 ||||| || || ||||| | | | ||| | |||||||| |||| ||| ||| Sbjct 61270 TGGTTCTTGCGCAGGTCAAGGAAGTCAAACACATCCGCGTGCCACGGCTCCAGGTAAATG 61211 Query 63348 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 63407 || | | ||||| || ||||| || |||||||| | ||| | || ||||| || | Sbjct 61210 GCAAAGGCACCAGGGCGCTTGTTGCCGCCCTGATCGACGTAGCGGGCAGTGTTGTTGAAC 61151 Query 63408 ACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCA 63467 || | || ||| ||||| |||||||| || |||| ||||| |||| || || ||| Sbjct 61150 ACACGCAGCATGGGAATGATACCGTTGGAGGTACCGTTGGTGCCGGCAATGTACGAGCCA 61091 Query 63468 CTGGCACGAAT---ATT-ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 63523 ||||||| || || || ||||| | || || || || ||||| || ||||| | Sbjct 61090 GTGGCACGGATGCGATGGAC--ATTGA--GTCCGATACCACCGGCCATCTTGGAGATCAT 61035 Query 63524 TGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAG 63583 || || || | || || || || ||||| || || || |||||| || || Sbjct 61034 AGCACAAGTCTTGAGAGTATCGTAAATGCCCTCGATCGAGTCTTCCTTCATGTCAACCAG 60975 Query 63584 AAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 63643 || || |||| ||| | || || || || || | || || || ||||| Sbjct 60974 GAAGCAAGATGACAGCTGGGCCTGGGGCGTACCAGCGTTGAACAGAGTGGGCGAGGCGTG 60915 Query 63644 CGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGC-----TGAGTCTATATCC 63698 || || | || || | || ||||||||||||||| | | ||| | || Sbjct 60914 GGTGAAGAACTTGCTCGACATGAGGTTGTACGTCTCAATAACACGATCAACTCTGTCGCC 60855 Query 63699 CATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTG 63758 | ||| || || || |||||||| | ||||||||| || | || || |||||| Sbjct 60854 C-----CAAATGCCAACAGCCACACGCATAATCATGTGCTGGGGACGCTCGACAATCTTG 60800 Query 63759 TTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAA 63818 || || |||| || ||| || || | ||| || || ||||| || | ||| Sbjct 60799 CCGTCTAGCTTCAGCAGGTACGAACGCTCTAGAGTCTTGAAGCCAAAGTACTGGTAGTTG 60740 Query 63819 AAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTT 63859 ||||| || ||||| | ||| | |||| || | ||||| Sbjct 60739 AAGTCACGGTCGTACACAATGGCAGAGTCCAGCTCTTCCTT 60699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622942987319560