Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20musarum_20[genbank_20GCA_5F001513885.1_202016-01-13] 541 sequences; 28,417,647 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq516 107 1e-18 >seq516 Length=113924 Score = 107 bits (118), Expect = 1e-18 Identities = 197/286 (69%), Gaps = 2/286 (1%) Strand=Plus/Plus Query 6200 GTTCTACCGCTACAAAATGCCGCG-CATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTA 6258 ||||||||| ||||| ||||| || | || | ||||| |||| || ||||| ||||||| Sbjct 45105 GTTCTACCGGTACAAGATGCCCCGTCTTCAGA-CCAAGATCGAAGGCAAGGGTAACGGTA 45163 Query 6259 TTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCT 6318 | || || |||||||||||| || | | ||||| || | || | || |||| | Sbjct 45164 TCAAGACTGTCATTGTCAACCTGTCGGCCGTCGCCCAGTCACTGGCTCGTCCTGGTGCTC 45223 Query 6319 ACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACG 6378 ||| || || || || || | || || || || ||||| | |||| | | | | Sbjct 45224 ACCTGATCAAGTACTTTGGCTTTGAGCTGGGTGCCCAGACCAACATTGACCCCGCGGATG 45283 Query 6379 AGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCT 6438 | |||| ||| | ||||| ||||| | | |||||||||||| | |||||| Sbjct 45284 ACCGCTGGATCATCAACGGCTCGCACGATACCAAGAAGCTGCAGGACCACGTCTACGGCT 45343 Query 6439 TTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGAC 6484 | ||| ||||||||| ||||| | | ||| | ||||| ||||| Sbjct 45344 TCATTGTCAAGTTTGTTCTGTGCAAGAAGTGCAAGAACCCCGAGAC 45389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334944991546571