Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20musarum_20[genbank_20GCA_5F001513885.1_202016-01-13] 541 sequences; 28,417,647 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq21 149 8e-31 seq90 113 6e-20 >seq21 Length=78807 Score = 149 bits (164), Expect = 8e-31 Identities = 459/706 (65%), Gaps = 18/706 (3%) Strand=Plus/Minus Query 63018 CCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTT 63077 |||| ||||| || || | || ||||||| | ||| || || | || || || | Sbjct 61395 CCAGGCCAGGGCACTCGTTGGGGCACATCAGAGTCCAGTCCGAGTTCTTCTCAACACGCT 61336 Query 63078 TCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGT 63137 |||| ||||| ||||| ||||| || || | || || || | || | ||||| | Sbjct 61335 TCATGAAGAGGTCAGGGATCCACAGCGCCAGGAAAAGGTCACGGGCGCGGACCTCCTCCT 61276 Query 63138 TTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGT 63197 | || ||||| || || ||||| | | | ||| | |||||||| |||| || Sbjct 61275 TGCCGTGGTTCTTGCGCAGGTCAAGGAAGTCAAACACATCCGCGTGCCACGGCTCCAGGT 61216 Query 63198 ATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTAT 63257 | ||||| | | ||||| || ||||| || |||||||| | ||| | || ||||| | Sbjct 61215 AAATGGCAAAGGCACCAGGGCGCTTGTTGCCGCCCTGATCGACGTAGCGGGCAGTGTTGT 61156 Query 63258 TATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGC 63317 | | || | || ||| ||||| ||||| ||||| ||||| ||||| || | || || Sbjct 61155 TGAACACACGCAGCATGGGAATGATACCGTTGGAGGTACCGTTGGTGCCGGCAATGTACG 61096 Query 63318 TTCCACTGGCACGAAT---ATT-ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAG 63373 ||| ||||||| || || || ||||| | || || || || ||||| || ||| Sbjct 61095 AGCCAGTGGCACGGATGCGATGGAC--ATTGA--GTCCGATACCACCGGCCATCTTGGAG 61040 Query 63374 ATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTA 63433 || | || || || | ||||| || |||||||| || || ||| |||||| | Sbjct 61039 ATCATAGCACAAGTCTTGAGAGTATCGTAAATGCCCTCGATCGAGTCTTCCTTCATGTCA 60980 Query 63434 AGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAA 63493 | || || || |||| ||| | || || || || || | || || || Sbjct 60979 ACCAGGAAGCAAGATGACAGCTGGGCCTGGGGCGTACCAGCGTTGAACAGAGTGGGCGAG 60920 Query 63494 GCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGC-----TGAGTCTA 63548 ||||| || || | || || | || ||||||||||||||| | | ||| Sbjct 60919 GCGTGGGTGAAGAACTTGCTCGACATGAGGTTGTACGTCTCAATAACACGATCAACTCTG 60860 Query 63549 TATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGA 63608 | ||| ||| || || || |||||||| | ||||||||| || | || || | Sbjct 60859 TCGCCC-----CAAATGCCAACAGCCACACGCATAATCATGTGCTGGGGACGCTCGACAA 60805 Query 63609 TCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGT 63668 ||||| || || |||| || ||| || || | ||| || || ||||| || | || Sbjct 60804 TCTTGCCGTCTAGCTTCAGCAGGTACGAACGCTCTAGAGTCTTGAAGCCAAAGTACTGGT 60745 Query 63669 ATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTT 63714 | ||||| || ||||| | ||| | |||| || | ||||| Sbjct 60744 AGTTGAAGTCACGGTCGTACACAATGGCAGAGTCCAGCTCTTCCTT 60699 >seq90 Length=200924 Score = 113 bits (124), Expect = 6e-20 Identities = 362/557 (65%), Gaps = 6/557 (1%) Strand=Plus/Minus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || || || ||| ||| || || ||||| | ||| | ||||||||||| || || Sbjct 194424 CAGGCAAAGTCGGTGTGCAGGCCTTCGTCGCGCGAAATCAGCTCGTTGGAAAAGGTCAGA 194365 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 32780 |||||||| || |||||||| ||||| || ||||| ||||| | || || ||||| Sbjct 194364 CCGGGCATCAGACCACGCTTGCGCAGCCAGAAAATGGAGGCAAAGGCGCCCGAGAAGAAG 194305 Query 32781 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA-ACCG--GCGCTGTCATGT 32837 || || || || || |||||||| | || | || || | || ||| || Sbjct 194304 ATGCCCTCGACGGCGGCAAAGGCCACCAGACGCTGGGCAAAGGTCGACTCGCGATCGGAA 194245 Query 32838 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 32897 |||||||| | ||||| |||||||| | || || || || || || || || Sbjct 194244 ATCCACTTGAGGGCCCAGTCGGCCTTGCGGCGGATGCAGGGAATGGTGTCGATGGCGTTG 194185 Query 32898 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATT 32957 || || ||| | | | || || | || || || || | || ||| | Sbjct 194184 AACAGGTAGCTGCGCTGGGCAGGCTCCTTGATGTACGTGTCGATGAGCAGCGAGTACGTC 194125 Query 32958 TCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATC 33017 ||||| || ||||| || || || || || ||||||||||| | ||||||| ||| Sbjct 194124 TCCGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGGGCCTCGGGGATC 194065 Query 33018 TGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 33077 || || || | || || || | | || || || || || ||||| ||| ||| Sbjct 194064 TGGACCTCGCCCGAGAAACGCTCAACCAGGTTCTCGTTGACAATGCCGTCCGAGGCAGCA 194005 Query 33078 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGT-CTGGT--GTTAGTTTATTCCAA 33134 ||||| |||| || || || ||||| || || | || || | | || ||||| Sbjct 194004 AAAAAGGCCAGGACGTGCGAGATGAAATACTTCTCATCCTTGTTCATGCGGTTGTTCCAG 193945 Query 33135 TCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 33194 || | || ||| || || | ||| | || || | ||||| || || ||||| ||||| Sbjct 193944 TCGTGGAGATCCTTGGACAGATCAATCTCCTCGGCCGTCCAGAAAGACGCCTCGGCCTTC 193885 Query 33195 TTATACATATTCCAGAT 33211 || ||||| | |||||| Sbjct 193884 TTGTACATCTGCCAGAT 193868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633627715063600