Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20musarum_20[genbank_20GCA_5F001513885.1_202016-01-13] 541 sequences; 28,417,647 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq107 109 1e-18 seq259 96.9 7e-15 >seq107 Length=49618 Score = 109 bits (120), Expect = 1e-18 Identities = 159/222 (72%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 |||||||||||||| |||| ||||| || || || |||| ||||||||||| ||| Sbjct 10695 GGTGAGGATCTGTGCAACTGCACCTTCTCTCTTGCCTACGGTGCCAAGATTCTGCTTAAC 10636 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 |||| ||| | ||||||||| | || || ||||| ||||||||| || | Sbjct 10635 CAGACCCACCTGCGTCTGAAGCGTGGCCAGCGTTACGGTCTGTGCGGTCCCAACGGTTCC 10576 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || ||| ||||| ||||||||||| |||| ||| | | ||| ||||| | ||| Sbjct 10575 GGCAAGTCGACTCTGATGCGCGCCATCAACAACGAGCAGGTTG-AGGGTTTCCCCAAGCA 10517 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTC 279565 || ||||| | ||| || | || ||||||||| | ||||| Sbjct 10516 GTCGGAGGTCAAGACCGTCTTCGTCGAGCACGACCTGGACTC 10475 Score = 89.7 bits (98), Expect = 1e-12 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 280702 CTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA- 280760 ||||||| ||||| ||||| ||||| || ||| ||||| ||||| | | || Sbjct 9293 CTCACTCGCGCATGAAGGGTCTGTCTGGTGGTCAGCGTGTCAAGGTTGTCCTGGCTGCCT 9234 Query 280761 GCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGC 280820 |||| |||||| | |||||| |||| ||||| || |||||||||||||| |||||||| Sbjct 9233 GCTC-GTGGCAGCGTCCTCACTTGATTGTTCTTGATGAGCCTACCAACTACCTGGACCGT 9175 Query 280821 GAGAGCCTGGGCGCTCTG 280838 || ||||| |||||| Sbjct 9174 GACTCTCTGGGTGCTCTG 9157 >seq259 Length=20262 Score = 96.9 bits (106), Expect = 7e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 279692 GCCAGTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCT 279751 ||| || || || ||||||||||||||||||||||||||||| || | || ||||| || Sbjct 15837 GCCCGTCGGATCGCTGTCGGGTGGTTGGAAGATGAAGCTGGCTCTGGCGCGTGCCATGCT 15896 Query 279752 ACTGCGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGT 279811 | ||||| || || ||||| || ||||| |||||||| |||| ||||||| Sbjct 15897 GCAAAAGGCCGACGTGCTGCTGCTGGACGAGCCGACCAACCATTTGGATGTTGCCAACGT 15956 Query 279812 AGCCTGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCA 279871 ||||| | | |||||| | | | | | || | || || ||||| ||||| Sbjct 15957 CAAGTGGCTGGAGAACTACCTCAAGACGCACCCGGACATTACGTCGCTGATTGTTTCTCA 16016 Query 279872 CGACTCTGGCTTCCTAGA 279889 |||| ||| ||||| || Sbjct 16017 CGACAGTGGATTCCTGGA 16034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027829675484981