Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20musarum_20[genbank_20GCA_5F001513885.1_202016-01-13] 541 sequences; 28,417,647 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq88 107 5e-18 seq13 107 5e-18 seq90 86.0 1e-11 >seq88 Length=56780 Score = 107 bits (118), Expect = 5e-18 Identities = 139/191 (73%), Gaps = 6/191 (3%) Strand=Plus/Minus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 || ||||| || ||||||| || ||||| || || || | || || || ||||||||| Sbjct 28287 TTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 28228 Query 288346 AGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || ||||| ||| || ||| || || || ||||||||||| || | || || || Sbjct 28227 AGGCGCTGCTGA---TCCGGGGGAATGCCCTCCTTATCCTGGATCTTGGACTTGACATTG 28171 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || || || ||||| || |||||||| || || || ||||||||| Sbjct 28170 TCGATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACG 28111 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 28110 AAAATCTGCAT 28100 >seq13 Length=236849 Score = 107 bits (118), Expect = 5e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || || || | || || || ||||| || ||||| | | Sbjct 135583 CCACCACGGAGGCGCAGCACCAGGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCCGAG 135642 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 |||||||| || ||||| | || || || ||||| ||||||||||| || || Sbjct 135643 AGCGTGCGACCATCTTCAAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCCGGAGGA 135702 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| || | || || || || || | || || || || Sbjct 135703 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCCGAGGACTCCACC 135762 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| ||||| ||||||||||| || |||||||| Sbjct 135763 TCCAGAGTGATGGTCTTGCCGGTAAGAGTCTTGACAAAGATCTGCAT 135809 Score = 98.7 bits (108), Expect = 2e-15 Identities = 139/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||||| || ||||| || || || | || || || || ||| Sbjct 135391 TCCTTCTGGATGTTGTAGTCGGACAGTGTGCGGCCATCCTCCAGCTGCTTACCAGCAAAG 135450 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||||||||| || || ||| || || || || |||||||| || | || || Sbjct 135451 ATCAGACGCTGCTG---GTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACA 135507 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | || || || || || || ||||| ||||| ||||| ||||||||| Sbjct 135508 TTGTCGATGGTGTCCGAGGACTCCACCTCCAGAGTGATGGTCTTGCCGGTAAGAGTCTTG 135567 Query 288460 ACGAATATCTGCAT 288473 || || |||||||| Sbjct 135568 ACAAAGATCTGCAT 135581 >seq90 Length=200924 Score = 86.0 bits (94), Expect = 1e-11 Identities = 124/175 (71%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 269150 TGATCGGTATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTATCT 269209 || |||| ||||| |||||||||||||| || || || || || || || || ||| | Sbjct 194538 TGCTCGGCATGAACGCCGATCTCATGAAGCAGTACATTGAGTTTGTCGCCGACCGTCTGC 194597 Query 269210 TCACGGCACTCGGTTATGAGAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAAC 269269 | || ||||| | || || || ||| || | ||| ||||| | ||| ||||| Sbjct 194598 TGGTTGCCCTCGGCAACGACAAGGTCTACCGCTCCACGAACCCCTTTGACTTCATGGAGA 194657 Query 269270 TAATTTCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGTCAGCGACTATCA 269324 || ||||| | || ||||| |||||||| || |||||||| |||||| || Sbjct 194658 ACATCTCGCTGGGCGGCAAGACCAACTTCTTTGAGAAGCGTGTTGCCGACTACCA 194712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179646223151798