Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20musarum_20[genbank_20GCA_5F001513885.1_202016-01-13] 541 sequences; 28,417,647 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq90 114 3e-20 seq107 98.7 2e-15 seq259 86.0 1e-11 >seq90 Length=200924 Score = 114 bits (126), Expect = 3e-20 Identities = 161/226 (71%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 243500 AAATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCC 243559 |||||||||| || || || | | |||||||||||| | ||| || | || ||| Sbjct 194475 AAATCATCACCGACGCCGTCGTCATTGAAAAGGAATTCCTGACCGAGGCCCTGCCCTGCG 194534 Query 243560 GGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCA 243619 || | ||||||||| | || |||||| |||||||| || || || |||||||| Sbjct 194535 CCCTGCTCGGCATGAACGCCGATCTCATGAAGCAGTACATTGAGTTTGTCGCCGACCGTC 194594 Query 243620 TTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGG 243679 | | | || || || | || || || ||| ||||| ||||||||||| ||| |||| Sbjct 194595 TGCTGGTTGCCCTCGGCAACGACAAGGTCTACCGCTCCACGAACCCCTTTGACTTCATGG 194654 Query 243680 AGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGT 243725 || ||| ||||| || || || |||||||| || |||||||| Sbjct 194655 AGAACATCTCGCTGGGCGGCAAGACCAACTTCTTTGAGAAGCGTGT 194700 >seq107 Length=49618 Score = 98.7 bits (108), Expect = 2e-15 Identities = 126/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 334181 GGGGAACCCTTCAAGCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCC 334240 |||||| || |||| ||| |||| || |||||||||||||| || || || | || Sbjct 10522 GGGGAAACCCTCAACCTGCTCGTTGTTGATGGCGCGCATCAGAGTCGACTTGCCGGAACC 10581 Query 334241 GTTTGGCCCACACAGACCGTAGCGGTTTCCACGCTTCAGATTGAACCGCGTATTGTTCAG 334300 ||| || || ||||||||||| || | |||||||||||| | | || | ||| || Sbjct 10582 GTTGGGACCGCACAGACCGTAACGCTGGCCACGCTTCAGACGCAGGTGGGTCTGGTTAAG 10641 Query 334301 AAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACACAGATCCTCACC 334354 ||||| || |||| || || ||||| || || | |||||||||||||| Sbjct 10642 CAGAATCTTGGCACCGTAGGCAAGAGAGAAGGTGCAGTTGCACAGATCCTCACC 10695 >seq259 Length=20262 Score = 86.0 bits (94), Expect = 1e-11 Identities = 188/279 (67%), Gaps = 2/279 (1%) Strand=Plus/Minus Query 333714 TCGGGACGCTTCTTC-ACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTT 333772 ||||| ||| |||| || ||| | | ||| || || | |||| | |||||| ||| Sbjct 16127 TCGGGCCGCA-CTTCGACAAACGCCGCCAGGTTGCCGTGGTACAGCGCCAGCTTCTTGTT 16069 Query 333773 AGGTTCGTAATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACAC 333832 | ||||| ||| |||| || || |||| ||||| || |||||| || || Sbjct 16068 GGTCTCGTAGTGGTAAATATCAGTCGTCACCTCGTCCAGGAATCCACTGTCGTGAGAAAC 16009 Query 333833 AATCACGCACGAAACGTCCTTAAGGTTGATCAGGTATTCAATCAGCCACCTCACGTTAGA 333892 ||||| ||| || |||| | | | ||||| | ||||||| | ||||| | Sbjct 16008 AATCAGCGACGTAATGTCCGGGTGCGTCTTGAGGTAGTTCTCCAGCCACTTGACGTTGGC 15949 Query 333893 CACAGAAAGATGGTTGGTCGGCTCGTCAAGAAGTAGTAGCTTTGCGTTCAGGAGCATTGC 333952 ||| | |||||||||||||||||| || || || | | || || | ||||| || Sbjct 15948 AACATCCAAATGGTTGGTCGGCTCGTCCAGCAGCAGCACGTCGGCCTTTTGCAGCATGGC 15889 Query 333953 ACGTGCAAGAGCGAGTTTCATTTTCCACCCTCCTGAAAG 333991 ||| || ||||| || ||||| ||||| || || || || Sbjct 15888 ACGCGCCAGAGCCAGCTTCATCTTCCAACCACCCGACAG 15850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102872355318350