Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20musarum_20[genbank_20GCA_5F001513885.1_202016-01-13] 541 sequences; 28,417,647 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq90 178 1e-39 seq13 134 1e-26 seq88 114 1e-20 seq131 100 3e-16 >seq90 Length=200924 Score = 178 bits (196), Expect = 1e-39 Identities = 411/611 (67%), Gaps = 25/611 (4%) Strand=Plus/Plus Query 46979 CATCCACACGGAAATGTACAACCTTCTCATACACGCCCTCATCAAAGACGAAGAGAAGCA 47038 ||||||| |||| | |||| || ||||| || | |||||| || | ||| Sbjct 194113 CATCCACTCGGAGACGTACTCGCTGCTCATCGACACGTACATCAAGGAGCCTGCCCAGCG 194172 Query 47039 -AGCGACGCTTTTGAACGGTTTCGAGAGCATGCCCTGCGTGCGCAGAAAGGCCGAGTGGG 47097 ||| || || || |||| |||| | ||| |||||| | ||| | |||||||| |||| Sbjct 194173 CAGCTAC-CTGTTCAACGCCATCGACACCATTCCCTGCATCCGCCGCAAGGCCGACTGGG 194231 Query 47098 CCATGAAGTACATT---GAAAACGAAAACGTC-ACTCTGGCCGAACGTTTGATCGCTTTC 47153 || | |||| ||| || ||| ||| || | ||| | ||| || | || || Sbjct 194232 CCCTCAAGTGGATTTCCGATCGCGA----GTCGACCTTTGCCCAGCGTCTGGTGGCCTTT 194287 Query 47154 GCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATATTTTACATGAAAACC 47213 ||| |||||||||| |||||||||||||| |||||| | || || | || | Sbjct 194288 GCCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTTGCCTCCATTTTCTGGCTGCGCAAG 194347 Query 47214 AAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTG 47273 || | |||||||| || || ||| ||||||||| || ||| | |||||||||||| Sbjct 194348 CGTGGTCTGATGCCCGGTCTGACCTTTTCCAACGAGCTGATTTCGCGCGACGAAGGCCTG 194407 Query 47274 CACACCAACTTTGCCTG---TCTCTACT-ACAACACTAGAGTCGATCAA--AAGTTGGAC 47327 |||||| |||||||||| |||| || || | | | || | | ||| | | Sbjct 194408 CACACCGACTTTGCCTGCCTGCTCTTCTCGCACCTGAACAACCGCCCCAGCAAGAAGCTC 194467 Query 47328 GTGCCCACCGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCC 47387 || | || || || | |||| ||||||| |||||| | ||| || | || Sbjct 194468 GT--------TGAG-GAAATCATCACCGACGCCGTCGTCATTGAAAAGGAATTCCTGACC 194518 Query 47388 GAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAA 47447 ||||| |||||| | | | || |||||||| || | |||| ||||||| || Sbjct 194519 GAGGCCCTGCCCTGCGCCCTGCTCGGCATGAACGCCGATCTCATGAAGCAGTACATTGAG 194578 Query 47448 TTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACCACACCGAGAAT 47507 |||||||||||||| ||||| ||| || | |||| | |||| | || ||| Sbjct 194579 TTTGTCGCCGACCGTCTGCTGGTTGCCCTCGGCAACGACAAGGTCTACCGCTCCACGAAC 194638 Query 47508 CCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGC 47567 || || || || ||| | ||||| ||||| | |||||||||||||| || |||||||| Sbjct 194639 CCCTTTGACTTCATGGAGAACATCTCGCTGGGCGGCAAGACCAACTTCTTTGAGAAGCGT 194698 Query 47568 GTCGGCGAATA 47578 || | ||| || Sbjct 194699 GTTGCCGACTA 194709 >seq13 Length=236849 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| ||||| || | |||||||| || || || ||||| || Sbjct 135583 CCACCACGGAGGCGCAGCACCAGGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCCGAG 135642 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||||| ||| || ||||| || |||||| | |||| |||||||| || ||||| Sbjct 135643 AGCGTGCGACCATCTTCAAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCCGGAGGA 135702 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| || ||||| | |||| |||||||| ||| || Sbjct 135703 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCCGAGGACTCCACC 135762 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || |||||||| ||||| || ||||| |||||||| Sbjct 135763 TCCAGAGTGATGGTCTTGCCGGTAAGAGTCTTGACAAAGATCTGCAT 135809 Score = 134 bits (148), Expect = 1e-26 Identities = 161/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| ||||| || | |||||||| || || || ||||| || Sbjct 135811 CCACCACGGAGGCGCAGCACCAGGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCCGAG 135870 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||||| ||| || ||||| || |||||| | ||||| |||||||| || ||||| Sbjct 135871 AGCGTGCGACCATCTTCAAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGGTCCGGAGGA 135930 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| ||| || ||||| |||| |||| ||| |||| |||||| Sbjct 135931 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTG-TCGATGGTATCCGACGACTCGAC 135989 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 127101 ||||| ||| | || |||||||| || || || || Sbjct 135990 TTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGAC 136025 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| |||| || | || ||||| || || || ||||| ||| || ||||| | Sbjct 135367 CGCAGAACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGGCCA 135426 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || ||||| |||||| |||||||| || || || |||||||||||| Sbjct 135427 TCCTCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTG 135486 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||||| | |||| |||||||| ||| || || | || | Sbjct 135487 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCCGAGGACTCCACCTCCAGAGTGATG 135546 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||||||| ||||| || ||||| |||||||| Sbjct 135547 GTCTTGCCGGTAAGAGTCTTGACAAAGATCTGCAT 135581 Score = 104 bits (114), Expect = 2e-17 Identities = 148/206 (72%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| ||| | || | |||||||| || || || ||||| ||| | Sbjct 136095 CCACCACGGAGACGCAGCACAAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAC 136154 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || ||||| || ||||| |||||| |||||||| || ||||| Sbjct 136155 AGTGTGCGGCCATCCTCCAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCCGGAGGG 136214 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||||||| ||| ||| ||||| |||| |||| ||||| | | || || Sbjct 136215 ATACCCTCCTTGTCCTGGATCTTCGACTTGACGTTG-TCGATAGTGTCGGAAGATTCCAC 136273 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCA 127091 || | ||| | || ||||| |||| Sbjct 136274 CTCAAGGGTGATGGTCTTGCCCGTCA 136299 >seq88 Length=56780 Score = 114 bits (126), Expect = 1e-20 Identities = 138/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || || || ||||| ||| || ||||| ||| || ||||| || |||||| ||||| Sbjct 28287 TTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 28228 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 | ||||||||||| || || ||||||||||| ||| ||| || ||||| | ||| Sbjct 28227 AGGCGCTGCTGATCCGGGGGAATGCCCTCCTTATCCTGGATCTTGGACTTGACATTGTCG 28168 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 | |||||||| ||| || |||| ||| | ||| || || || || || || || ||| Sbjct 28167 ATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACGAAA 28108 Query 127106 ATCTGCAT 127113 |||||||| Sbjct 28107 ATCTGCAT 28100 >seq131 Length=44026 Score = 100 bits (110), Expect = 3e-16 Identities = 136/187 (73%), Gaps = 2/187 (1%) Strand=Plus/Minus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || ||||| ||||| ||| || ||||| ||| || ||||| || ||||| ||||| Sbjct 31457 TTCTGAATGTTGTAGTCGGACAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATC 31398 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTC 127044 | |||||||| || || || ||||||||||||||| ||| || ||||| |||| || Sbjct 31397 AGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTG-TC 31339 Query 127045 GACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 127104 || ||||||| |||||| || | ||| | || || || ||||| || || || || Sbjct 31338 GATCGTGTCCGAGGACTCGACCTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAA 31279 Query 127105 AATCTGC 127111 | | ||| Sbjct 31278 ACTGTGC 31272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475497584425840