Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20musarum_20[genbank_20GCA_5F001513885.1_202016-01-13] 541 sequences; 28,417,647 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq21 104 2e-17 seq13 104 2e-17 >seq21 Length=78807 Score = 104 bits (114), Expect = 2e-17 Identities = 153/213 (72%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 124105 TGCAGTACGACATGTGGAATGCTACACCGACAAATTTGTGGGACTGGAGCGTTTTAAAAC 124164 |||||| |||||||||||||| || || | | | ||||||||| | || || Sbjct 62017 TGCAGTTCGACATGTGGAATGTCACTCCCAGCGACCTCTGGGACTGG-GTGTCGCTCAAG 62075 Query 124165 AACGCATATCGAC--GCACGGTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCGACGGC 124222 | ||| ||| | ||||||| |||| ||||||||| || | ||| |||||||||||| Sbjct 62076 GA-GCAGATCAAGCAGCACGGTGTGCGCAACTCGCTGCTGCTTGCGCCCATGCCGACGGC 62134 Query 124223 AACCACTGCTCAAATTTTAGGAAACAACGAATCCTTCGAGCCGTTCACTAACAATTTGTA 124282 | ||| | || ||| | || |||||||| | ||||||||||| |||| ||| | || Sbjct 62135 CAGCACGTCGCAGATTCTGGGCAACAACGAGTGCTTCGAGCCGTACACTTCCAACATCTA 62194 Query 124283 CGTGCGACGAGTGTTAGCCGGCGATTTTCAAGT 124315 | ||| || ||| | || ||||| || || || Sbjct 62195 CCAGCGTCGTGTGCTGGCTGGCGAGTTCCAGGT 62227 >seq13 Length=236849 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | || ||| || ||||| || || ||||| ||||| || || || Sbjct 135580 ATACCACCACGGAGGCGCAGCACCAGGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCC 135639 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || || | ||| || | || || || ||| | |||| || ||||||||||| Sbjct 135640 GAGAGCGTGCGACCATCTTCAAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCCGGA 135699 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 |||||||| || || || || || || |||| || | |||||| || ||||| Sbjct 135700 GGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCCGAGGACTCC 135759 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||| | || |||||||| ||||| || ||||| || ||||| Sbjct 135760 ACCTCCAGAGTGATGGTCTTGCCGGTAAGAGTCTTGACAAAGATCTGCAT 135809 Score = 100 bits (110), Expect = 3e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | || ||| || ||||| || || ||||| ||||| || || || Sbjct 135808 ATACCACCACGGAGGCGCAGCACCAGGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCC 135867 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || || | ||| || | || || || ||| | ||||| || ||||||||||| Sbjct 135868 GAGAGCGTGCGACCATCTTCAAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGGTCCGGA 135927 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 |||||||| || || || || || || |||| || | || | ||| || || ||||| Sbjct 135928 GGAATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGTTGTCGATGGTATCCGACGACTC 135986 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTAC 45328 ||||||||| || | || |||||||| || || || || Sbjct 135987 GACTTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGAC 136025 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || || || | || || || ||||| || || ||||| ||||| || || ||| | Sbjct 135355 CCGCCACGCAGACGCAGAACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCG--G 135412 Query 45174 ACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 || || | | ||| |||| || || || || | |||| || ||||||||||| | Sbjct 135413 ACAGTGTGCGGCCATCCTCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCCGGGG 135472 Query 45232 GAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGA 45291 ||||||| || || || || || || |||| || | |||||| || ||||| | Sbjct 135473 GAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCCGAGGACTCCA 135532 Query 45292 CTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || ||||| | || |||||||| ||||| || ||||| || ||||| Sbjct 135533 CCTCCAGAGTGATGGTCTTGCCGGTAAGAGTCTTGACAAAGATCTGCAT 135581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452000143328360