Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thielaviopsis_20musarum_20[genbank_20GCA_5F001513885.1_202016-01-13]
541 sequences; 28,417,647 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq21 104 2e-17
seq13 104 2e-17
>seq21
Length=78807
Score = 104 bits (114), Expect = 2e-17
Identities = 153/213 (72%), Gaps = 4/213 (2%)
Strand=Plus/Plus
Query 124105 TGCAGTACGACATGTGGAATGCTACACCGACAAATTTGTGGGACTGGAGCGTTTTAAAAC 124164
|||||| |||||||||||||| || || | | | ||||||||| | || ||
Sbjct 62017 TGCAGTTCGACATGTGGAATGTCACTCCCAGCGACCTCTGGGACTGG-GTGTCGCTCAAG 62075
Query 124165 AACGCATATCGAC--GCACGGTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCGACGGC 124222
| ||| ||| | ||||||| |||| ||||||||| || | ||| ||||||||||||
Sbjct 62076 GA-GCAGATCAAGCAGCACGGTGTGCGCAACTCGCTGCTGCTTGCGCCCATGCCGACGGC 62134
Query 124223 AACCACTGCTCAAATTTTAGGAAACAACGAATCCTTCGAGCCGTTCACTAACAATTTGTA 124282
| ||| | || ||| | || |||||||| | ||||||||||| |||| ||| | ||
Sbjct 62135 CAGCACGTCGCAGATTCTGGGCAACAACGAGTGCTTCGAGCCGTACACTTCCAACATCTA 62194
Query 124283 CGTGCGACGAGTGTTAGCCGGCGATTTTCAAGT 124315
| ||| || ||| | || ||||| || || ||
Sbjct 62195 CCAGCGTCGTGTGCTGGCTGGCGAGTTCCAGGT 62227
>seq13
Length=236849
Score = 104 bits (114), Expect = 2e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| || || ||||| | || ||| || ||||| || || ||||| ||||| || || ||
Sbjct 135580 ATACCACCACGGAGGCGCAGCACCAGGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCC 135639
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
|| || | ||| || | || || || ||| | |||| || |||||||||||
Sbjct 135640 GAGAGCGTGCGACCATCTTCAAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCCGGA 135699
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290
|||||||| || || || || || || |||| || | |||||| || |||||
Sbjct 135700 GGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCCGAGGACTCC 135759
Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| || ||||| | || |||||||| ||||| || ||||| || |||||
Sbjct 135760 ACCTCCAGAGTGATGGTCTTGCCGGTAAGAGTCTTGACAAAGATCTGCAT 135809
Score = 100 bits (110), Expect = 3e-16
Identities = 155/219 (71%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| || || ||||| | || ||| || ||||| || || ||||| ||||| || || ||
Sbjct 135808 ATACCACCACGGAGGCGCAGCACCAGGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCC 135867
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
|| || | ||| || | || || || ||| | ||||| || |||||||||||
Sbjct 135868 GAGAGCGTGCGACCATCTTCAAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGGTCCGGA 135927
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289
|||||||| || || || || || || |||| || | || | ||| || || |||||
Sbjct 135928 GGAATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGTTGTCGATGGTATCCGACGACTC 135986
Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTAC 45328
||||||||| || | || |||||||| || || || ||
Sbjct 135987 GACTTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGAC 136025
Score = 96.9 bits (106), Expect = 3e-15
Identities = 160/229 (70%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173
|| || || || | || || || ||||| || || ||||| ||||| || || ||| |
Sbjct 135355 CCGCCACGCAGACGCAGAACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCG--G 135412
Query 45174 ACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231
|| || | | ||| |||| || || || || | |||| || ||||||||||| |
Sbjct 135413 ACAGTGTGCGGCCATCCTCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCCGGGG 135472
Query 45232 GAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGA 45291
||||||| || || || || || || |||| || | |||||| || ||||| |
Sbjct 135473 GAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCCGAGGACTCCA 135532
Query 45292 CTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
| || ||||| | || |||||||| ||||| || ||||| || |||||
Sbjct 135533 CCTCCAGAGTGATGGTCTTGCCGGTAAGAGTCTTGACAAAGATCTGCAT 135581
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 452000143328360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |