Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20musarum_20[genbank_20GCA_5F001513885.1_202016-01-13] 541 sequences; 28,417,647 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq21 174 2e-38 >seq21 Length=78807 Score = 174 bits (192), Expect = 2e-38 Identities = 459/682 (67%), Gaps = 14/682 (2%) Strand=Plus/Minus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCA-CGGCAGGCCTGCTT-CTCAGATAGTACATG 203896 || |||||| |||||||| |||| | || | |||| ||||| | | ||| ||||||||| Sbjct 62582 CTGGTCCACAGTGAACTGGATGG-GCGCAGCAGCAG-CCTGCGTACGCAGGTAGTACATG 62525 Query 203897 CCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTG 203956 || ||||| || ||| || ||| ||| | ||||||| | | |||| || | Sbjct 62524 CCCGTCTTGAGACCCAGCTTCCAGCCGGCAAAGTGCATGCTGGTAATCTTGCCCATAGTA 62465 Query 203957 GGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGC 204015 ||||| |||||| ||||| || ||||| |||||||| |||||| || || || || Sbjct 62464 GGGTCCTTCATGTGGATGTTGAGCGACTGCGACTGGTCGAT-AAAGGCACCACGGTCAGC 62406 Query 204016 GGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACA-CGTCTCTGG 204074 ||||| | | || || ||||||||||||||||| |||||| ||| || || || Sbjct 62405 AGCCATCTGCACAACCGTACGTTGCGAAATCTCCCACACAGTCTTGTACAGCGCCT-TGA 62347 Query 204075 TGTGTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCATC 204133 ||| | ||| | || | | ||| | ||| || || || || || | | || Sbjct 62346 TGTCGTCAGGGATG-CTAGGAATATTCTGGACCGAACCATTCTCAGCAATGATGCGGTTC 62288 Query 204134 CTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATG 204193 || | | ||| ||||| |||| || || || |||| || ||||| | Sbjct 62287 TTCATGTTATCCGACCACAGACCCAGGTCGACCAAATCACGCAACAACCACGGGTTAACA 62228 Query 204194 ATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAAC 204253 | ||| || || || | |||||| | || | | | |||| ||| | || ||||| Sbjct 62227 ACCTGGAACTCGCCAGCCAGCACACGACGCTGGTAGATGTTGGAAGTGTACGGCTCGAAG 62168 Query 204254 GCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGG 204313 |||||||||||| | |||||| | ||||||||||| |||||||| || || ||||| Sbjct 62167 CACTCGTTGTTGCCCAGAATCTGCGACGTGCTGGCCGTCGGCATGGGCGCAAGCAGCAGC 62108 Query 204314 GAGTTGCGCACACCGTATTTTTGGACCCTGC-GCTTCAGAGAGGTCCAGTCGTGCATCGC 204372 |||||||||||||||| | | || |||| ||| || || |||||| | | Sbjct 62107 GAGTTGCGCACACCGTGCTGCTTGA-TCTGCTCCTTGAGCGACACCCAGTCCCAGAGGTC 62049 Query 204373 ACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGCCCTT 204432 ||||| | || ||||||||||||||| | |||||| || || || ||||| Sbjct 62048 GCTGGGAGTGACATTCCACATGTCGAACTGCAGGATGCCCTGGGAAACGGGCGAGCCCTC 61989 Query 204433 GTACGTCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCA-CGAGGCGGCCATGGCGTGAT 204491 |||||| | || | ||||| | || || | || |||||| | || || | Sbjct 61988 GTACGTAGAGTAGGTACCCTCCTCCT-TGGCAATATCCATCGAGGCCGTCAGAGCAGCGT 61930 Query 204492 AGTACATGGTCTCAAAGATCTG 204513 ||| ||||| ||||||||||| Sbjct 61929 GGTAGATGGTTTCAAAGATCTG 61908 Score = 123 bits (136), Expect = 4e-23 Identities = 458/695 (66%), Gaps = 27/695 (4%) Strand=Plus/Minus Query 204923 CCCACATGCTGCTGGTTAGACTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATT 204982 |||| | || |||||| ||||||||||||| ||||||||||| ||| ||||| | Sbjct 61579 CCCAGGTTCTTCTGGTTGCTCTTGCGGTTACAGTGGTCCTTGTACAGCATAAACGGGTTG 61520 Query 204983 CCGTTCTCCATCTGAGATCGCAGAATGTGGGTCCACAATTCGCGAGCCT----CCACTTG 205038 || |||| |||||| ||||||| | ||| | | | |||| | || | Sbjct 61519 CCCGTCTCGGTCTGAGCCTCCAGAATGGCGTACCATAGCTTCTGGGCCTTGATCGACGCG 61460 Query 205039 CTTC-ACGTACATCCCTTGAGACTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGT 205097 | | ||| | ||| || |||||| || |||||| ||| |||| || |||| Sbjct 61459 CGGCCACGGCCCTCC--TG---CTCGTACCTTTCGTACAGAGCCTCAAACTCCTCGCCGT 61405 Query 205098 ACACGTCCATCAGCCCTGGACATTTTTTGGGACACATCAGAGACCACATCTGATCGTCTT 205157 | ||| ||| || || || | ||||| |||||||||| ||| || || |||| Sbjct 61404 AGCAGTCAGCCAGGCCAGGGCACTCGTTGGGGCACATCAGAGTCCAG-TCCGAGT-TCTT 61347 Query 205158 -TCACC-CTCTCCATAAACAGGTCGCTGATCCACAG-GCCGTAAAACAGATCACGGGCCC 205214 ||| | | || ||| || ||||| ||||||||| ||| ||| || |||||||| | Sbjct 61346 CTCAACACGCTTCATGAAGAGGTCAGGGATCCACAGCGCCAGGAAA-AGGTCACGGGCGC 61288 Query 205215 TAATTCCGTCGTCTCCAAGGTTCTTTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGC 205273 | | || | || ||||||| || ||| || ||| | | | || |||||| Sbjct 61287 GGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGG-AAGTCAAACACATCCGCGTGC 61229 Query 205274 CACGGCTCTAACCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATG 205333 |||||||| | | | ||| | || || || | |||||| || ||||| || || | Sbjct 61228 CACGGCTCCAGGTAAATGGCAAAGGCACCAGGGCGCTTGTTGCCGCCCTGATCGACGTAG 61169 Query 205334 CGAGTCATCGCGTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTG 205393 || | | |||||| || |||||||| || | | |||||||| ||| ||||| ||| Sbjct 61168 CGGGCAGTGTTGTTGAACACACGCAGCATGGGAATGATACCGTTGGAGGTACCGTTGGTG 61109 Query 205394 CTGTTGATGGCCGAGCCTTCAGCCCTCA--CGTTGGAGATGGCCGCGCCAATCCCGCCAG 205451 | | ||| |||||| || | | || |||| || | || || || || | Sbjct 61108 CCGGCAATGTACGAGCCAGTGGCACGGATGCGATGGACATTG--AGTCCGATACCACCGG 61051 Query 205452 AACACTTGGCGATCTGGGCGC-ACTCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCG 205510 ||||| |||| || | | ||||| ||||| ||| ||||| |||| || || Sbjct 61050 CCATCTTGGAGATCATAGCACAAGTCTTG-AGAGTATCGTAAATGCCCTCGATCGAGTCT 60992 Query 205511 TCCGCCAGTGTC-ACCAGATAGCACGAAGCCAGCTTGGCAAAGTTGGTGCCCGCGTGGAA 205569 ||| || |||| ||||| |||| || | ||||| ||| | || || |||| ||| Sbjct 60991 TCCTTCA-TGTCAACCAGGAAGCAAGATGACAGCTGGGCCTGGGGCGTACCAGCGTTGAA 60933 Query 205570 GAGCGTGGGGCTGGCGTGGCTGAAGCGCTT-CTCG 205603 || ||||| ||||||| ||||| ||| |||| Sbjct 60932 CAGAGTGGGCGAGGCGTGGGTGAAGAACTTGCTCG 60898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795149822762960