Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20musarum_20[genbank_20GCA_5F001513885.1_202016-01-13] 541 sequences; 28,417,647 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq13 95.1 8e-15 seq131 84.2 1e-11 >seq13 Length=236849 Score = 95.1 bits (104), Expect = 8e-15 Identities = 140/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || || | || |||| |||||||| || || ||||| Sbjct 135391 TCCTTCTGGATGTTGTAGTCGGACAGTGTGCGGCCATCCTCCAGCTGCTTACCAGCAAAG 135450 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| ||||| ||||| || Sbjct 135451 ATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGAC--AT 135508 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | ||||| || || ||| || || | || ||||| || || || |||||||| Sbjct 135509 --TGTCGATGGTGTCCGAGGACTCCACCTCCAGAGTGATGGTCTTGCCGGTAAGAGTCTT 135566 Query 34967 CACAAAGATCTGCATA 34982 ||||||||||||||| Sbjct 135567 GACAAAGATCTGCATA 135582 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| |||||||| || | || |||| || ||||| || || || || Sbjct 135619 TCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGACCATCTTCAAGCTGCTTGCCAGCGAAA 135678 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| ||||| ||||| || Sbjct 135679 ATCAGACGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGAC--AT 135736 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | ||||| || || ||| || || | || ||||| || || || |||||||| Sbjct 135737 --TGTCGATGGTGTCCGAGGACTCCACCTCCAGAGTGATGGTCTTGCCGGTAAGAGTCTT 135794 Query 34967 CACAAAGATCTGCATA 34982 ||||||||||||||| Sbjct 135795 GACAAAGATCTGCATA 135810 >seq131 Length=44026 Score = 84.2 bits (92), Expect = 1e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 34794 TTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATT 34853 ||||||||||| ||||| || || | || |||| || ||||| || || ||||| || Sbjct 31457 TTCTGAATGTTGTAGTCGGACAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATC 31398 Query 34854 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT 34913 || || |||||||| | || | ||||||||||| ||||| |||||| | Sbjct 31397 AGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCG 31338 Query 34914 ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAA 34972 |||| || || ||| || || | ||| ||||| || ||||| || ||||| || || Sbjct 31337 ATCGTGTCCGAGGACTCGACCTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAA 31279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324631459548648