Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20musarum_20[genbank_20GCA_5F001513885.1_202016-01-13] 541 sequences; 28,417,647 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq512 131 5e-25 seq101 125 2e-23 >seq512 Length=116584 Score = 131 bits (144), Expect = 5e-25 Identities = 395/602 (66%), Gaps = 30/602 (5%) Strand=Plus/Minus Query 251402 AGGCG--ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATA 251459 ||||| || ||||| || | | ||| | || |||| | |||||||||| | ||| | Sbjct 106476 AGGCGTCATCAGACCGCAAATCTCACAAATGTGAACGCGGAAAGCATCAGAGACCTCAAA 106417 Query 251460 TAGCCGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTC 251519 || || |||| ||| || |||||||| | ||||||||||||||| |||||||| Sbjct 106416 GAGACGCTCCTTCAGGAAAGCAGCGGCACCGTGGGCAATCATACAATCACGTTCCATTTC 106357 Query 251520 ACCGAAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAAC 251579 |||||||| ||||||||||| || || | ||||||| | ||||| || || | | | Sbjct 106356 TCCGAAACGCAGACCACCATCACGCGCACGACCCTCGACGGGCTGGCGCGTCATAATCTG 106297 Query 251580 CATAGGACC----GATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCT 251635 | ||||| | ||||| || ||| || | |||||||| ||||||| Sbjct 106296 TACGGGACCACGAGCACGAGCG----TGAATCTTGTCGTCCACCATATGGCGAAGACGCT 106241 Query 251636 GGTAGAATGCGGGACCGATGAAGA----TGCTCGAAGGCATTTGCTCTCCAGTTAGAGCG 251691 ||||| | | |||||||| ||||| || ||||| |||| ||||| || || Sbjct 106240 GGTAGTACGTGGGACCGAAGAAGACCTGGGCGCGAAG---CTTGC-GACCAGTGTGACCG 106185 Query 251692 TTATACATAACTTCGTTTCCATTAGATTCATAACCAAGTT---TCTGTAGCTCTGAAGCA 251748 | || | || ||| ||| ||| | ||||| | | | |||| | ||| | Sbjct 106184 TGGTAAAGCACCTCGAAACCACGAGACTGGTAACCGTGCTCACGCAGTAGGTTGGAAACC 106125 Query 251749 ATATCACCAATCTTGAATTTGCTAAAACTGGTGCCGTCTCCGTAAAGACCCATTTGAATC 251808 | | | | ||| | | | ||| ||| | || || | | |||| | | | Sbjct 106124 GAGT---CGACCGTGACATCGGTGAAAGGCGTGGCATCACCCTCCATACCCTTGAGCGTG 106068 Query 251809 AACACTTTGCCTAAAAGTGTCTCTTTCAGTTGGGCGATAGTCATACGACTGGGAATAGCA 251868 ||||||| | | ||| ||| ||||| || |||||||| ||||| || Sbjct 106067 GCGACTTTGCTGAGCAAGCACTCAATCAAATGGGCAATGGTCATACGCGACGGAATGGCG 106008 Query 251869 TGGGGATTGATGATGATGTCGGGTTTCAGTCCATCAGCAGTGAAGGGCATATCCTTTTCC 251928 ||||| |||||||| ||||| || | | || ||| | ||||||||||||| ||| Sbjct 106007 TGGGGGTTGATGATAATGTCAGGAGTGATACCTTCACGGGAGAAGGGCATATCC---TCC 105951 Query 251929 T--CAATA-ATGTTTCCAATAGTTCCCTTTTGTCCGTGACGAGAACTGAACTTATCACCA 251985 | | ||| || |||||||| ||||| || ||||||||||| ||||| ||||| Sbjct 105950 TGACGATACGTGACACCAATAGTACCCTTCTGACCGTGACGAGACGCAAACTTGTCACCG 105891 Query 251986 AT 251987 || Sbjct 105890 AT 105889 Score = 95.1 bits (104), Expect = 4e-14 Identities = 107/141 (76%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 233273 GCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCATTT 233332 |||||||| |||||||||||||||||||||||||| || | |||||||||||||||| Sbjct 106391 GCACCGTGGGCAATCATACAATCACGTTCCATTTCTCCGAAACGCAGACCACCATCACGC 106332 Query 233333 GACCTACCCTGGACTGTTTGACGAGTTA-AAACAGTTCTTGGACCCTGAGCACGATAATT 233391 | | ||||| ||| | || || || | || | || | ||||| |||||||| | Sbjct 106331 GCACGACCCTCGACGGGCTGGCGCGTCATAATCTGTAC-GGGACCACGAGCACGAGCGTG 106273 Query 233392 AATTTTATCTTTAACCATATG 233412 ||| || || | |||||||| Sbjct 106272 AATCTTGTCGTCCACCATATG 106252 >seq101 Length=191744 Score = 125 bits (138), Expect = 2e-23 Identities = 196/276 (71%), Gaps = 6/276 (2%) Strand=Plus/Plus Query 302592 ACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACG 302651 |||||||||||| || ||||| | ||| || || || || ||||| ||||| |||| Sbjct 166169 ACGACGCTGAATGTAGCCAGTCTCGGCTGTCTTGACGGCAGTGTCAATCAGACCTTCACG 166228 Query 302652 ACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCCCCCAATAAAGGAGCTCT 302710 |||| |||| || |||||||| | ||| | || || || || | | | | ||| ||| Sbjct 166229 ACCAGCCATGGCGTGGAAGAAGAACTC-GCTGGGAGTCAGGCCACGGAGATACGAGTTCT 166287 Query 302711 CAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGT 302770 | ||||| ||||| |||||||| || | ||| |||||| ||||| ||||| || | || Sbjct 166288 CGACGAAGCCACGGGCCTCGGGGGAGTAATCGTCCTTGGTGAAGTGGGGCAGAGTGCGGT 166347 Query 302771 TCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGA--AAT 302828 || | ||| | || |||||||| || || || ||||||| || | || || | Sbjct 166348 ACTTGAATCCGAAGGGAATACGCTTACCCTCCACAATCTGCTGACC--GACAAGAGCTGT 166405 Query 302829 CATCTGCGAAATATTTAAATCACTGCCCTTGGAGCC 302864 ||| |||||||| || | | | |||||||| || Sbjct 166406 CATTTGCGAAATGTTGATAGTAGAACCCTTGGAACC 166441 Score = 93.3 bits (102), Expect = 1e-13 Identities = 105/140 (75%), Gaps = 3/140 (2%) Strand=Plus/Plus Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872 ||||| || | | ||| || ||||| |||| ||||| |||||| | ||||||||| Sbjct 165366 AGAATCTCCTTGAGACGAGGCACACCCAGGGTGACGTT---CTTGGAAGAAACACCAGCG 165422 Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932 || |||||||| ||||| || | ||||||| ||||||||||| || || |||| | Sbjct 165423 AAATGGAAAGTGTTCAGCGTCATCTGAGTAGCGGGCTCACCAATCGACTGCGCAGCAAGC 165482 Query 301933 ATACCAACCATTTCTCCTGG 301952 | ||||||||| || || || Sbjct 165483 ACACCAACCATCTCGCCAGG 165502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471807398004317