Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20musarum_20[genbank_20GCA_5F001513885.1_202016-01-13] 541 sequences; 28,417,647 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq13 120 2e-22 seq131 111 1e-19 seq88 100 2e-16 >seq13 Length=236849 Score = 120 bits (132), Expect = 2e-22 Identities = 158/217 (73%), Gaps = 8/217 (4%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | ||| ||||||||| ||||| ||||| || || |||| |||| Sbjct 135369 CAGAACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGGCCATC 135428 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| || || |||||||| || |||||||| | || | ||||||||||| Sbjct 135429 CTCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTC 135488 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTA 34940 | || || ||||| || | ||||| || || ||| || || | || | Sbjct 135489 CTGGATCTTGGACTTGAC--AT--TGTCGATGGTGTCCGAGGACTCCACCTCCAGAGTGA 135544 Query 34941 TGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||||| || || || ||||| |||||||||||||| Sbjct 135545 TGGTCTTGCCGGTAAGAGTCTTGACAAAGATCTGCAT 135581 Score = 114 bits (126), Expect = 8e-21 Identities = 157/217 (72%), Gaps = 8/217 (4%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | || ||||||||| ||||| |||||||| || |||| |||| Sbjct 135597 CAGCACCAGGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGACCATC 135656 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| || ||||| ||||| || |||||||| | || | ||||||||||| Sbjct 135657 TTCAAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCCGGAGGAATGCCCTCCTTGTC 135716 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTA 34940 | || || ||||| || | ||||| || || ||| || || | || | Sbjct 135717 CTGGATCTTGGACTTGAC--AT--TGTCGATGGTGTCCGAGGACTCCACCTCCAGAGTGA 135772 Query 34941 TGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||||| || || || ||||| |||||||||||||| Sbjct 135773 TGGTCTTGCCGGTAAGAGTCTTGACAAAGATCTGCAT 135809 Score = 105 bits (116), Expect = 4e-18 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | || ||||||||| ||||| |||||||| || |||| |||| Sbjct 135825 CAGCACCAGGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGACCATC 135884 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| || ||||| |||| || |||||||| | || | ||||||||||| Sbjct 135885 TTCAAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGGTCCGGAGGAATGCCCTCCTTGTC 135944 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || |||||| | || | || | |||||| || | ||| ||||| Sbjct 135945 CTGGATCTTGGACTTGACGTTGTCGATGGTATCCGACGACTCGACTTCGAGGGTGATGGT 136004 Query 34945 CTTTCCCGTGAGGGTCTTTAC 34965 ||| || ||||||||||| || Sbjct 136005 CTTGCCGGTGAGGGTCTTGAC 136025 Score = 89.7 bits (98), Expect = 3e-13 Identities = 133/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| || ||||| | || ||||||||| ||||| ||||| || || |||| |||| Sbjct 136109 CAGCACAAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGGCCATC 136168 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| || || |||||||| || |||||||| | || | ||||||||||| Sbjct 136169 CTCCAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATACCCTCCTTGTC 136228 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || |||||| | || | || | || || |||| ||| ||||| Sbjct 136229 CTGGATCTTCGACTTGACGTTGTCGATAGTGTCGGAAGATTCCACCTCAAGGGTGATGGT 136288 Query 34945 CTTTCCCGT 34953 ||| ||||| Sbjct 136289 CTTGCCCGT 136297 >seq131 Length=44026 Score = 111 bits (122), Expect = 1e-19 Identities = 133/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 ||||||||||||| ||||| || || |||| |||| || || ||||| || || |||| Sbjct 31459 CCTTCTGAATGTTGTAGTCGGACAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGA 31400 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 |||| || |||||||| | || | ||||||||||| | || || |||||| Sbjct 31399 TCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGT 31340 Query 34908 CTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAA 34967 | |||| || || |||||| || | ||| |||||||| ||||| |||||||| || | Sbjct 31339 CGATCGTGTCCGAGGACTCGACCTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGA 31280 Query 34968 A 34968 | Sbjct 31279 A 31279 >seq88 Length=56780 Score = 100 bits (110), Expect = 2e-16 Identities = 140/194 (72%), Gaps = 8/194 (4%) Strand=Plus/Minus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 ||||||| ||||| ||||| || || |||| |||| ||||| ||||| || ||||||| Sbjct 28289 CCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGA 28230 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 |||| || ||||| || | || | |||||||| || | || || ||||| || Sbjct 28229 TCAGGCGCTGCTGATCCGGGGGAATGCCCTCCTTATCCTGGATCTTGGACTTGAC--AT- 28173 Query 34908 CTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | ||||| || || ||| || || | ||| || ||||| ||||| |||||||| Sbjct 28172 -TGTCGATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTG 28114 Query 34964 ACAAAGATCTGCAT 34977 || || |||||||| Sbjct 28113 ACGAAAATCTGCAT 28100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325690652564879