Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20musarum_20[genbank_20GCA_5F001513885.1_202016-01-13] 541 sequences; 28,417,647 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq90 113 4e-20 >seq90 Length=200924 Score = 113 bits (124), Expect = 4e-20 Identities = 328/493 (67%), Gaps = 19/493 (4%) Strand=Plus/Plus Query 46776 AAGGCCCAGTGGGCCATGAAGTGGAT---CGAGAGCGAGACCGCCACGCTGGCCGAGCGC 46832 |||||| | |||||| | |||||||| ||| ||||| | || | ||| |||| Sbjct 194219 AAGGCCGACTGGGCCCTCAAGTGGATTTCCGATCGCGAGTCGACCT---TTGCCCAGCGT 194275 Query 46833 ATGGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCAGTTTTGCCGCCATTTTT 46892 ||||||| || || ||||| ||| | || || |||||| |||||| ||||||| Sbjct 194276 CTGGTGGCCTTTGCCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTTGCCTCCATTTTC 194335 Query 46893 TACATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGC 46952 | | | || | ||||| || ||||| || |||||| |||| |||||| Sbjct 194336 TGGCTGCGCAAGCGTGGTCTGATGCCCGGTCTGACCTTTTCCAACGAGCTGATTTCGCGC 194395 Query 46953 GACGAAGGACTACACACGGACTTTGCGTGTCT-CTATTACAAGACGCGCGTGAATGAGAA 47011 |||||||| || ||||| |||||||| || || || || ||| | |||| | Sbjct 194396 GACGAAGGCCTGCACACCGACTTTGCCTGCCTGCTCTTCT----CGCACCTGAACAACCG 194451 Query 47012 ATTAAACTCGGA-CACGATCCTGAGCATGTTTAGGGAGGCGGTGAGCATCGAAAAGGAGT 47070 | | | | | || | || || | | || || || ||| |||||||| | Sbjct 194452 CCCCAGCAAGAAGCTCGTTGAGGAA-ATCATCACCGACGCCGTCGTCATTGAAAAGGAAT 194510 Query 47071 TTTTTACTGCGGCGCTGCCCGTCGCCTTGCTGGGCATGAACGCACAGTCT-ATGTGCGAA 47129 | | || | ||| |||||| |||| |||| ||||||||||| | ||| ||| | Sbjct 194511 TCCTGACCGAGGCCCTGCCCTGCGCCCTGCTCGGCATGAACGC-CGATCTCATGAAGCAG 194569 Query 47130 TATATTGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGACAACCGAAATATTTTAAT 47189 || ||||||||||| || || |||||| |||| ||||| ||| ||| | | || Sbjct 194570 TACATTGAGTTTGTCGCCGACCGTCTGCTGGTTGCCCTCGG-CAA-CGACAAGGTCTACC 194627 Query 47190 GCTC--GTAATCCGTTTGAGTTTATGAACAACATTTCGCTCGAGGGCAAAACCAATTTTT 47247 |||| || || ||||| || ||| | ||||| ||||| | ||||| ||||| || | Sbjct 194628 GCTCCACGAACCCCTTTGACTTCATGGAGAACATCTCGCTGGGCGGCAAGACCAACTTCT 194687 Query 47248 TCGAGAAACGAGT 47260 | ||||| || || Sbjct 194688 TTGAGAAGCGTGT 194700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476607976916760