Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20musarum_20[genbank_20GCA_5F001513885.1_202016-01-13] 541 sequences; 28,417,647 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq90 214 3e-49 seq21 145 1e-28 seq168 123 4e-22 seq108 113 6e-19 seq468 95.1 2e-13 >seq90 Length=200924 Score = 214 bits (236), Expect = 3e-49 Identities = 381/545 (70%), Gaps = 17/545 (3%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| | |||||| || ||||||||||| || || ||||| ||||||||| | || | Sbjct 193867 GATCTGGCAGATGTAC-AAGAAGGCCGAGGCGTCTTTCTGGACGGCCGAGGAGATTGATC 193925 Query 1455835 TCGGCGCCGA----CACGGTCCACTGGGTGT--CGC-TGAGCGACGACGAGCGCCATTTC 1455887 | | || |||| ||||| ||| ||| | | || ||| ||||| Sbjct 193926 TGTCCAAGGATCTCCACG----ACTGGAACAACCGCATGAACAAGGATGAGAAGTATTTC 193981 Query 1455888 ATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGC 1455947 ||| ||||||||| ||||||||| || ||| || ||||| || ||||||||||| Sbjct 193982 ATCTCGCACGTCCTGGCCTTTTTT-GCTGCCTCGGACGGCATTGTCAACGAGAACCTGGT 194040 Query 1455948 CGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGAT 1456007 | || || | |||||||| | || ||||| || | || ||||| |||||||| Sbjct 194041 TGAGCGTTTCTCGGGCGAGGTCCAGATCCCCGAGGCCCGCTGCTTCTACGGCTTCCAGAT 194100 Query 1456008 CGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA 1456067 | || || ||||||||||| || || |||||||| || |||||||| ||| ||||||| Sbjct 194101 CATGATGGAGAACATCCACTCGGAGACGTACTCGCTGCTCATCGACACGTACATCAAGGA 194160 Query 1456068 CCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAA 1456127 || | | || | |||| || |||||||||||| | || | | | || Sbjct 194161 GCCTGCCCAGCGCAGCTACCTGTTCAACGCCATCGACACCATTCCCTGCATCCGCCGCAA 194220 Query 1456128 GGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTC 1456187 |||||||||||| | |||||||| | | | | ||||| ||||||| |||| || Sbjct 194221 GGCCGACTGGGCCCTCAAGTGGATTTCCGA-TCGCGAGTCGAC-CTTTGCCCAGCGTCTG 194278 Query 1456188 GTCGGCTTTGCCG-CGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGG 1456246 || | |||||||| ||||||||||||||| ||||||||| || | |||| || ||| Sbjct 194279 GTGGCCTTTGCCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTTGCCTCCATTTTCTGG 194338 Query 1456247 CTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGA 1456306 || ||||| || || |||||||||| | |||| |||||| | || ||||| Sbjct 194339 CTGCGCAAGCGTGGTCTGATGCCCGGTC-TGACCTTTTCCAACGAGCTGATTTCGCGCGA 194397 Query 1456307 CGAAG 1456311 ||||| Sbjct 194398 CGAAG 194402 Score = 105 bits (116), Expect = 1e-16 Identities = 157/219 (72%), Gaps = 3/219 (1%) Strand=Plus/Plus Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582 |||||| ||| ||||||| || || || || || | | |||| | ||||| || Sbjct 194477 ATCATCACCGACGCCGTCGTCATTGAAAAGGAATTCCTGACCGAGGCCCTGCCCTGCGCC 194536 Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642 || |||||||||||||| |||||| |||||||||| | |||||||||||||| | Sbjct 194537 CTGCTCGGCATGAACGCC-GATCTCATGAAGCAGTACATTG-AGTTTGTCGCCGACCGTC 194594 Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATG 1456702 |||| | || |||||| | || ||| |||||| | | ||||| || | ||| Sbjct 194595 TGCTGGTTGCCCTCGGCAAC-GACAAGGTCTACCGCTCCACGAACCCCTTTGACTTCATG 194653 Query 1456703 GAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAG 1456741 ||| |||||||| | |||||||||||||| || ||| Sbjct 194654 GAGAACATCTCGCTGGGCGGCAAGACCAACTTCTTTGAG 194692 >seq21 Length=78807 Score = 145 bits (160), Expect = 1e-28 Identities = 344/512 (67%), Gaps = 31/512 (6%) Strand=Plus/Plus Query 259682 CACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTACTTT 259741 |||||||| | || ||| ||||||| ||| ||| ||||| |||| ||||||| Sbjct 60696 CACAAGGAAGAGCTGGACTCTGCCATTGTGTACGACCGTGACTTCAACTACCAGTACTTT 60755 Query 259742 GGTCTGGCGAC-CTTGCGCCGGTCCTACCTGACCAA---AGTGCGCGATATTGTCGTCGA 259797 || | ||| || | || | || |||||| || || || | ||||||| | Sbjct 60756 GGCTTCAAGACTCTAGAGC-GTTCGTACCTGCTGAAGCTAGACGGCAAGATTGTCG---A 60811 Query 259798 GCGGCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTCGA 259857 ||| |||||| | ||| | |||||||| || ||||| ||| ||| ||| Sbjct 60812 GCGTCCCCAGCACATGATTATGCGTGTGGCTGTTGGC-ATTTGGGG-----------CGA 60859 Query 259858 CAATGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCA-GTTGTTCACCT 259916 || | | || | || | | || ||| | ||||||| |||| ||| |||||| Sbjct 60860 CAGAG---TTGATCGTGTTATTGAGACGTACAACCTCATGTCG-AGCAAGTTCTTCACCC 60915 Query 259917 CAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTC 259976 || ||||||| || || || || || ||||| | | ||| || || ||||| | Sbjct 60916 ACGCCTCGCCCACTCTGTTCAACGCTGGTACGCCCCAGGCCCAGCTGTCATCTTGCTTCC 60975 Query 259977 TGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGC 260036 || | |||||||||| || |||||||||||||| || || || |||||| || || Sbjct 60976 TGGTTGACATGAAGGAAGACTCGATCGAGGGCATTTACGATACTCTCAAGACTTGTGCTA 61035 Query 260037 TCATCTCCAAGGCGGCCGGCGGCATCGGTTT---TGCCGCACACAAGGTGCGCGCCGCGG 260093 | ||||||||| |||||| || ||||| | || | | || | || ||| | | Sbjct 61036 TGATCTCCAAGATGGCCGGTGGTATCGGACTCAATGTCCATCGCA---TCCGTGCCACTG 61092 Query 260094 GCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTT 260153 || | ||| | || ||||||||||| |||||||| | | |||||||| || || | Sbjct 61093 GCTCGTACATTGCCGGCACCAACGGTACCTCCAACGGTATCATTCCCATGCTGCGTGTGT 61152 Query 260154 TTAACGACACGGCGCGCTACGTCGACCAGTGC 260185 | ||| |||| || ||||||||||| ||| || Sbjct 61153 TCAACAACACTGCCCGCTACGTCGATCAGGGC 61184 Score = 100 bits (110), Expect = 4e-15 Identities = 130/177 (73%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 262870 AGCGGCCGCTGGGACTGGGACGCACTGCGGGCGTCGGTTCGA-CAGCATGGCCTGCGCAA 262928 |||| || ||||||||||| | || || | | | || | ||||| || ||||||| Sbjct 62046 AGCGACCTCTGGGACTGGGTGTCGCTCAAGGAG-CAGATCAAGCAGCACGGTGTGCGCAA 62104 Query 262929 CTCGTTGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGA 262988 |||| |||| | |||| |||||| ||||||| ||||||||||| |||||||||| ||| Sbjct 62105 CTCGCTGCTGCTTGCGCCCATGCCGACGGCCAGCACGTCGCAGATTCTGGGCAACAACGA 62164 Query 262989 GGCGTTCGAGGTCATCACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTT 263045 | |||||| ||| |||||||||| ||| || ||||| | ||||| || Sbjct 62165 GTGCTTCGAGCCGTACACTTCCAACATCTACCAGCGTCGTGTGCTGGCTGGCGAGTT 62221 >seq168 Length=185901 Score = 123 bits (136), Expect = 4e-22 Identities = 360/537 (67%), Gaps = 37/537 (7%) Strand=Plus/Minus Query 1600258 CTCCATCTCTCCAAGGCGGAAGCCGCCCGAGCGCGAGCGGCCCTCGACCGGCTGCTTGGT 1600317 |||||| || || || || | || ||| ||||||||| |||||| ||||||| || Sbjct 135659 CTCCATTTCACCCAGACGCAGACCACCCTCGCGCGAGCGACCCTCGGTCGGCTGCCGCGT 135600 Query 1600318 GAGCATCTGGACGGGGCCGCGTGGT-CGGGCGTGAATCTTGTCGATGGCCACGTGGCGCA 1600376 ||| || || || | |||| | || | ||| |||||||| ||| ||| || Sbjct 135599 CAGCGA-TGCGCGCGGACCCGTGCTGCGCGAGTGCATCTTGTCCTGAACCATGTGCTTCA 135541 Query 1600377 GGGCCTGGTAGTAGACCGGCGCC--GTAAAGATCAACGCCTCCATGGGCTCGCCGGTG-T 1600433 || ||||||||| | |||| | ||| || | ||||||| | || |||||| ||| | Sbjct 135540 GGCGCTGGTAGTAAATCGGCCCGTTGTACAGGT--ACGCCTCAAAGGCCTCGCCCGTGAT 135483 Query 1600434 GCGGGTGGTAGAGCACCTCCTTGCCGTAGCGCTCGCATCCGTGG-CGAGCCAACTCGGCG 1600492 || | ||| || | ||||| || | | | | | |||||| ||| ||| | || | Sbjct 135482 GCCCGACGTAAAGTAG-TCCTTACCCTCCCACGAGAAGCCGTGGTCGA-CCAGCACGCGG 135425 Query 1600493 GCGACATCGTCGACGGTGACGCCGCCAAAGGGCGT-GCCGTCGCCCACATAGCCCTCGCG 1600551 | | || ||||| | || || | | ||| | ||| ||| |||| ||| ||| Sbjct 135424 CCCATTTCCTCGACCG-GATGCGATCGGAAGGCATCGCCAAAGCC---ATAGTCCTTGCG 135369 Query 1600552 GCAGGCCA---------CCTTGCCCAGGAGGGCCTCCATCATCTTGCCCATGGTCATGCG 1600602 || | ||| |||||||| || ||| |||| |||||| | |||||||| Sbjct 135368 GCCGTCCAGCACCGACGCCTTGCCCGTCAGACACTCAATCAGCTTGCCGACTGTCATGCG 135309 Query 1600603 CGACGGGATGGCGTGCGGGTTGATCACAATGTCGGGCGTGGCACC--GCCGCGAG-GCGA 1600659 |||||||| |||||||||| || | ||||||||| ||| |||| | || | Sbjct 135308 CGACGGGAAACCGTGCGGGTTCATGATGATGTCGGGC-----ACCAGGCCGGCATCGCTA 135254 Query 1600660 CCAGGGCATGTCCTC--GGTGGAGCGCACGCTGCCCACGGTGCCCTTTTGGCCGTGGCGC 1600717 | |||| ||||| ||| || | | ||||||| ||||||||| ||||||||| Sbjct 135253 A-ACGGCAAATCCTCCTGGTCGACA--ATGATGCCCACCACGCCCTTTTGCCCGTGGCGC 135197 Query 1600718 GACGACAGTTTGTCGCCCACCTCGGGCTGGCGCATGGCCCGCGTGACGATCTTGACC 1600774 ||||| | |||||||||| ||||||| | ||| | |||||| | ||||||| Sbjct 135196 GACGAAAACTTGTCGCCCAGCTCGGGCCGCCGCGTCTGCCGCGTCTGCACCTTGACC 135140 >seq108 Length=49737 Score = 113 bits (124), Expect = 6e-19 Identities = 139/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 332856 CGTCAGTGAGGCGCACAAAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCA 332915 |||| || |||||| || | ||||| |||||||||||| ||| || | ||| |||| | Sbjct 30410 CGTCGGTCAGGCGCGCATACCGCAGAATGGCACAACGGGACTGTAGCGGCTCAATGATCT 30469 Query 332916 TTGACGACGTGTTGCAGGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCG 332975 | ||| ||||||||| | ||| || || || || |||| | ||||||| || Sbjct 30470 TGTTGGACTGGTTGCAGGCAAAGGCGAAGCGGGTGGTGTTGGAGTAGATTTCCATTGTGC 30529 Query 332976 ACCGGAGGGCCTGTTGGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCT 333035 || ||||| |||||||| ||| || | ||||||| ||||||||||| |||| || Sbjct 30530 GGCGCAGGGCTTGTTGGGCGCCCGAAGTCATCGAGTCGGCTTCGTCGAGGATAATGAGCT 30589 Query 333036 TGTGGCGCCC 333045 ||||||| || Sbjct 30590 TGTGGCGGCC 30599 >seq468 Length=131937 Score = 95.1 bits (104), Expect = 2e-13 Identities = 79/97 (81%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 165768 GGCGCCGTCGGTGCGCGCACCACCGAGAGCCAGGTGCACCGCGAGATGGCGTCGGCGCTG 165827 ||||| || |||||||||||||||||| ||| ||||||| ||| ||||||| | ||| Sbjct 95832 GGCGCTGTTGGTGCGCGCACCACCGAGTCGCAGCTGCACCGTGAGTTGGCGTCTGGCCTG 95773 Query 165828 CCGCTGCCCATTGGCTTCAAAAACAGCACCGACGGCA 165864 || | || |||||||||| ||| |||||||||||| Sbjct 95772 TCGTTCCCTGTTGGCTTCAAGAACGGCACCGACGGCA 95736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177759019555642