Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20musarum_20[genbank_20GCA_5F001513885.1_202016-01-13] 541 sequences; 28,417,647 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq21 102 3e-16 seq90 89.7 2e-12 >seq21 Length=78807 Score = 102 bits (112), Expect = 3e-16 Identities = 89/111 (80%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 254971 CGGCATTATACCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGG 255030 ||| || || || ||| | ||||||||||||||| || |||||||||||||| || || Sbjct 61127 CGGTATCATTCCCATGCTGCGTGTGTTCAACAACACTGCCCGCTACGTCGATCAGGGCGG 61186 Query 255031 CGGCAAACGCCCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGA 255081 | ||| ||||| || || || |||| |||||||||||||||||||| || Sbjct 61187 CAACAAGCGCCCTGGTGCCTTTGCCATTTACCTGGAGCCGTGGCACGCGGA 61237 Score = 96.9 bits (106), Expect = 1e-14 Identities = 173/250 (69%), Gaps = 2/250 (1%) Strand=Plus/Plus Query 256124 CAGATCGAGGAGCACGGACTGCGCAACTCGCAACGATTGGCGCCCATGCCAACCGCCAGC 256183 |||||| || ||||||| |||||||||||| | | ||||||||||| || |||||| Sbjct 62079 CAGATCAAGCAGCACGGTGTGCGCAACTCGCTGCTGCTTGCGCCCATGCCGACGGCCAGC 62138 Query 256184 ACCGCTCAAATCCTGGGTAACGTGGAAAGCATCGAACCCCTGACTACCAACTTCTTCTCG 256243 || | || || ||||| ||| || || |||| || ||| ||||| ||| | | Sbjct 62139 ACGTCGCAGATTCTGGGCAACAACGAGTGCTTCGAGCCGTACACTTCCAACATCTACCAG 62198 Query 256244 CGCCGCGTTCGCTCCGGCGAGTTCGCCGTGGTGAACCAGTACTTGGTGGACGACTTGGTA 256303 || || || | | ||||||||| || || |||| || ||| || || ||||| Sbjct 62199 CGTCGTGTGCTGGCTGGCGAGTTCCAGGTTGTTAACCCGTGGTTGTTGCGTGATTTGGT- 62257 Query 256304 CGA-CTCGGTCTGTGGAACGAGAAGATGCAACAACGCATAATTCGGGCCCGTGGGTCGGT 256362 ||| || ||||||||| || || ||| | | ||||| ||| | ||| ||||| Sbjct 62258 CGACCTGGGTCTGTGGTCGGATAACATGAAGAACCGCATCATTGCTGAGAATGGTTCGGT 62317 Query 256363 GCAGAACATT 256372 ||||| ||| Sbjct 62318 CCAGAATATT 62327 >seq90 Length=200924 Score = 89.7 bits (98), Expect = 2e-12 Identities = 123/171 (72%), Gaps = 1/171 (1%) Strand=Plus/Plus Query 443699 CTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTT 443758 ||| | | |||| || || || ||||| | ||||| || | || || ||| ||| Sbjct 194263 CTTTGCCCAGCGTCTGGTGGCCTTTGCCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTT 194322 Query 443759 TAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACG 443818 | |||||||| |||||| || |||||||| || |||| ||||||||||||| |||| Sbjct 194323 T-GCCTCCATTTTCTGGCTGCGCAAGCGTGGTCTGATGCCCGGTCTGACCTTTTCCAACG 194381 Query 443819 AACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCT 443869 | ||||| || ||||| || |||| |||||| ||||| || |||| Sbjct 194382 AGCTGATTTCGCGCGACGAAGGCCTGCACACCGACTTTGCCTGCCTGCTCT 194432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588324990349745