Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20musarum_20[genbank_20GCA_5F001513885.1_202016-01-13] 541 sequences; 28,417,647 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq21 203 4e-47 seq103 95.1 2e-14 >seq21 Length=78807 Score = 203 bits (224), Expect = 4e-47 Identities = 906/1407 (64%), Gaps = 55/1407 (4%) Strand=Plus/Minus Query 110706 GGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGG 110765 |||||||||| | ||||| || || ||||| || || || |||| || || | ||| Sbjct 62196 GGTAGATGTTGGAAGTGTACGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGCGACGTGC 62137 Query 110766 AGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTT 110825 ||| || ||||| || || | || || ||| || | ||| | || |||||| | | Sbjct 62136 TGGCCGTCGGCATGGGCGCAAGCAGCAGCGAGTTGCGCACACCGTGCTGCTTGATCTGCT 62077 Query 110826 CCTTGAGA-ACATCCCAGTCGTAGTTGA-GCTTGGTTTCACCTTCCCACATGTCAAACTG 110883 ||||||| ||| ||||||| || | ||| || | || |||| ||||||| ||||| Sbjct 62076 CCTTGAGCGACA-CCCAGTCCCAGAGGTCGCTGGGAGTGACATTCC-ACATGTCGAACTG 62019 Query 110884 AAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGC 110943 || | || ||||| |||| || ||||| | || |||| ||| | | | || Sbjct 62018 CAGGATGCCCTGGGAAACGGGCGAGCCCTCGTACGTAGAGTAGGTACCCTCCTCCTTGGC 61959 Query 110944 CAATTCACAGCTCG-CCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCA 111002 | || || | | || ||| | ||||| || |||||||||||||| | | || | Sbjct 61958 AATATC-CATCGAGGCCGTCAGAGCAGCGTGGTAGATGGTTTCAAAGATCTGCGTGTTGA 61900 Query 111003 TCTCCTTGGCTTCATCTGAATCAAA-----TGCGTAGCGGCACAAAATAAATACATCCGC 111057 || || || | || ||||| |||| |||| || ||| |||| || Sbjct 61899 GCTTGCGAGCCTCGGCCGACTCAAAAGGCATGCGCAGCGCCAGGAAAG-----CATCAGC 61845 Query 111058 GAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTC 111117 ||||| || ||||| | ||||||||| | ||| ||||| || || | | | || ||| Sbjct 61844 CAGACCCTGGACACCAACACCAATAGGACGGTGGCGCATGTTG--CTGTTGTG-AGCCTC 61788 Query 111118 A---ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGT 111174 | ||||| || || |||||||| ||||| || || ||||| ||| || Sbjct 61787 AGGCACGGGGTAGTGGTTGACGTCAATGATGCGGTTCAGGTTGCGCACAACAACCTTGGT 61728 Query 111175 GATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAG 111234 || || || || || | | || | | | | | | |||| || || || Sbjct 61727 GACCTCGTGTAGCTTCTGGAAGTCGTACTCGTTCTTGTTGTAGTCGACAAACGCCGGCAG 61668 Query 111235 GGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTC 111294 || | || |||| ||||| || || |||||| | |||||| | ||| || Sbjct 61667 AGCCAGCGAAGCCAGGTTGCATACGGCAACCTCATCGGGCGCACAGTACTCGATAATCTC 61608 Query 111295 TGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCA 111354 || || | |||||| || || || |||| ||||| ||||| ||||| ||| || Sbjct 61607 GGTGCACAGGTTGGAGCTGCGGATGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTACA 61548 Query 111355 CGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTT 111414 |||||||| ||||| | || | |||||||| ||||| | | ||||| || | Sbjct 61547 GTGGTCCTTGTACAGCATAAACGGGTTGCCCGTCTCGGTCTGAGCCTCCAGAATGGCGTA 61488 Query 111415 CCAAA-CATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGT 111473 ||| | | || | | || | | | | || | | || |||||| ||||||| || || Sbjct 61487 CCATAGCTTCTGGGCCTTGATCGACG-CGCGGCCACGGCCCTCCTGCTCGTACCTTTCGT 61429 Query 111474 AGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGA 111533 | || || ||||||||||| || ||| | || || || || || || || | Sbjct 61428 ACAGAGCCTCAAACTCCTCGCCGTAGCAGTCAGCCAGGCCAGGGCACTCGTTGGGGCACA 61369 Query 111534 AAAGAGACCATTGACCACCTTC--CTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAG 111591 |||| ||| | || ||| |||||| ||||||||||| ||||| || |||||||| Sbjct 61368 TCAGAGTCCAGT--CCGAGTTCTTCTCAACACGCTTCATGAAGAGGTCAGGGATCCACAG 61311 Query 111592 GG--ATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCA 111649 | | |||| || || | || |||| || | || ||||| || | ||| Sbjct 61310 CGCCAGGAAA--AGGTCACGGGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCA 61253 Query 111650 AGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGA------TAGATCCC 111703 ||||| || | | |||||||||||| ||||| || || | || | || | | Sbjct 61252 AGGAAGTCAAACACATCCGCGTGCCACGGCTCCAGGTAAATGGCAAAGGCACCAGGGCGC 61193 Query 111704 TT-TCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGG 111762 || | | ||||| |||| || ||||| || ||| ||| || || || ||||| || Sbjct 61192 TTGTTGCCGCCC----TGATCGACGTAGCGGGCAGTGTTGTTGAACACACGCAGCATGGG 61137 Query 111763 AATAATACCATCTGATTGACCATTTGTCCCCCGAA--TACGAGATTTATTGGCTCTCACA 111820 ||| ||||| | || ||| || || || || |||||| | |||| | | Sbjct 61136 AATGATACCGTTGGAGGTACCGTTGGTGCCGGCAATGTACGAG--CCAGTGGCACGGATG 61079 Query 111821 TCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGA 111880 ||||| | | || ||||| || ||| ||| ||||| ||||| | | ||| Sbjct 61078 CGATGGACATTGAGTCCGATACCACCGGCCATCTTGGAGATCATAGCACAAGTCTTGAGA 61019 Query 111881 GTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATC 111940 || | || || || | ||| ||||| ||||| || | | ||||||||| |||| | Sbjct 61018 GTATCGTAAATGCCCTCGATCGAGTCTTCCTTCATGTCAACCAGGAAGCAAGATGACAGC 60959 Query 111941 TGCGGTCT-TGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG 111999 || || || || |||||||| ||||| || || || | ||||| ||| | | |||| Sbjct 60958 TG-GGCCTGGGGCGTACCAGCGTTGAACAGAGTGGGCGAGGCGTGGGTGA--AGAACTTG 60902 Query 112000 --GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCT-TCCCCGTGGATGCCGAT 112056 ||||| || ||| ||||| | ||| ||||| ||| || || ||||| | Sbjct 60901 CTCGACATGAGGTTGTACGTCTCAATAACACGATCAA-CTCTGTCGCCCCAAATGCCAAC 60843 Query 112057 TGCGACCCGCATGAACATGTACTGTGG 112083 || || ||||| | ||||| ||| || Sbjct 60842 AGCCACACGCATAATCATGTGCTGGGG 60816 >seq103 Length=50471 Score = 95.1 bits (104), Expect = 2e-14 Identities = 208/308 (68%), Gaps = 4/308 (1%) Strand=Plus/Minus Query 11623 GCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTC 11682 ||| | |||||||||||| || || |||||||| || || ||| | || || | | Sbjct 34746 GCCAATCGCATCAATCTCGTCGATAAAGACAATGCACGGCGCATTCTTACGCGCCGTGGC 34687 Query 11683 AAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTG--CG 11740 ||| | || || || | | |||||| || ||||||||||| ||||| | | | Sbjct 34686 AAACAAGTCACGCACTCGCGACGGACCCACGCCGACAAACATCTCGACAAACTCCGACCC 34627 Query 11741 GCAGAGCACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTC 11800 || || | ||| | ||| || || || || ||||| |||| ||| | || ||| Sbjct 34626 GCTGA-CGCTGAA-GAACGGCACGCCCGACTCGCCCGCCGTGGCCTTGGCCAACAGCGTC 34569 Query 11801 TTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCACTTCCA 11860 |||||||| || ||| ||||| |||| ||| || || ||||||||||| || | Sbjct 34568 TTTCCCGTTCCCGGCGGACCCGACAGAATGGCACCGCGCGGGATCTTGGCGCCCAGCCGC 34509 Query 11861 AAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCTCTTCAAGTTCATCTTTGGCCGCG 11920 | | | | ||||| | |||||| || | ||||| ||| || || | |||||| || Sbjct 34508 ACAAACTTTTCGGGCTTCTTGAGGAACTGCACAAACTCCATAATCTCCACCTTGGCCTCG 34449 Query 11921 TCAATCCC 11928 || || || Sbjct 34448 TCCATGCC 34441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628027752933600