Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20musarum_20[genbank_20GCA_5F001513885.1_202016-01-13] 541 sequences; 28,417,647 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq13 138 3e-27 seq101 105 2e-17 seq88 105 2e-17 seq273 98.7 3e-15 seq131 96.9 1e-14 >seq13 Length=236849 Score = 138 bits (152), Expect = 3e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || || || ||||||||||| || || || || || || Sbjct 135579 CATACCACCACGGAGGCGCAGCACCAGGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTC 135638 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || ||||||||||| || || ||||| || || ||||| ||||| || || Sbjct 135639 CGAGAGCGTGCGACCATCTTCAAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCCGG 135698 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| || || || ||||| || || | || ||||| || || | || || | || Sbjct 135699 AGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCCGAGGACTC 135758 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || | ||||| ||||| || || || ||||| |||||||| Sbjct 135759 CACCTCCAGAGTGATGGTCTTGCCGGTAAGAGTCTTGACAAAGATCTGCAT 135809 Score = 122 bits (134), Expect = 3e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 ||||| || || || || ||||| || || || || || || || | ||| || ||||| Sbjct 135370 AGAACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGGCCATCC 135429 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||||||||| ||||| ||||| || || ||||| || || || ||| Sbjct 135430 TCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 135489 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || | || ||||| || || | || || | || || || || || | ||| Sbjct 135490 TGGATCTTGGACTTGACATTGTCGATGGTGTCCGAGGACTCCACCTCCAGAGTGATGGTC 135549 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || || || ||||| |||||||| Sbjct 135550 TTGCCGGTAAGAGTCTTGACAAAGATCTGCAT 135581 Score = 120 bits (132), Expect = 9e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || || || ||||||||||| || || || || || || Sbjct 135807 CATACCACCACGGAGGCGCAGCACCAGGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTC 135866 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || ||||||||||| || || ||||| || || | ||| ||||| || || Sbjct 135867 CGAGAGCGTGCGACCATCTTCAAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGGTCCGG 135926 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| || || || ||||| || || | || || || || || | ||| || | || Sbjct 135927 AGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTATCCGACGACTC 135986 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 ||||| || || | ||||| ||||| || || || || Sbjct 135987 GACTTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGAC 136025 Score = 118 bits (130), Expect = 3e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || ||||| || ||||||||||| || || || || || || Sbjct 136091 CATACCACCACGGAGACGCAGCACAAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTC 136150 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | ||| || ||||| || || || || ||||||||||| || || ||||| || || Sbjct 136151 GGACAGTGTGCGGCCATCCTCCAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCCGG 136210 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||| || || || || ||||| || || | || || || || || | || || | ||| Sbjct 136211 AGGGATACCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATAGTGTCGGAAGATTC 136270 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGT 140719 || ||||| || | ||||| || || | ||| Sbjct 136271 CACCTCAAGGGTGATGGTCTTGCCCGTCACTGT 136303 >seq101 Length=191744 Score = 105 bits (116), Expect = 2e-17 Identities = 107/139 (77%), Gaps = 3/139 (2%) Strand=Plus/Plus Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517 || |||||||| | || || ||| || || | ||||||||| || |||||||| || Sbjct 165381 CGAGGCACACCCAGGGTGACGTTC---TTGGAAGAAACACCAGCGAAATGGAAAGTGTTC 165437 Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577 || || | ||||||| |||||||||||| |||||||| |||| || |||||||| || Sbjct 165438 AGCGTCATCTGAGTAGCGGGCTCACCAATCGACTGCGCAGCAAGCACACCAACCATCTCG 165497 Query 377578 CCAGGATTGACAATAGCCT 377596 ||||| |||| | ||||| Sbjct 165498 CCAGGGTTGATGAAAGCCT 165516 >seq88 Length=56780 Score = 105 bits (116), Expect = 2e-17 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 140550 TTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATT 140609 || || || || || || || | || || ||||| || || || || ||||| ||||| Sbjct 28287 TTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 28228 Query 140610 AGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCA 140669 || || |||||||| || ||||| || || |||||||| || || | || ||||| || Sbjct 28227 AGGCGCTGCTGATCCGGGGGAATGCCCTCCTTATCCTGGATCTTGGACTTGACATTGTCG 28168 Query 140670 ATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAA 140729 || | || || | ||||| || || |||| ||||| || || || || || || ||| Sbjct 28167 ATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACGAAA 28108 Query 140730 ATCTGCAT 140737 |||||||| Sbjct 28107 ATCTGCAT 28100 >seq273 Length=18612 Score = 98.7 bits (108), Expect = 3e-15 Identities = 185/272 (68%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 349610 GCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCT 349669 ||||| | ||||| || || || || || ||| | |||||| || || || || || Sbjct 15149 GCTGTCGTCACTGTTCCCGCTTACTTCAACGATTCTCAGCGTCAGGCCACCAAGGACGCC 15090 Query 349670 GGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATT 349729 || ||||| || | || ||||| | || || || || |||||||| || || ||| Sbjct 15089 GGTCTTATTGCCGGTCTTAACGTTCTGCGTATCATCAACGAGCCCACTGCCGCTGCCATT 15030 Query 349730 GCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGT 349789 || || || ||||| || | | || || || | || || || ||| | ||| Sbjct 15029 GCCTACGGTCTTGACAAGAAGGTCGAGGGCGAGCGCAACGTCCTGATCTTCGATCTGGGT 14970 Query 349790 GGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCA 349849 |||||||| || ||||| || || || || |||| || || || || || || || | Sbjct 14969 GGTGGTACCTTCGATGTCTCTCTGCTGACCATTGAGGATGGTATCTTCGAGGTCAAGTCC 14910 Query 349850 ACTGCTGGTGATACACATCTTGGTGGAGAAGA 349881 || ||||||||||| || || ||||| || || Sbjct 14909 ACCGCTGGTGATACCCACCTGGGTGGTGAGGA 14878 >seq131 Length=44026 Score = 96.9 bits (106), Expect = 1e-14 Identities = 133/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 140550 TTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATT 140609 || ||||| || || || || | || || ||||| ||||| || || ||||||||||| Sbjct 31457 TTCTGAATGTTGTAGTCGGACAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATC 31398 Query 140610 AGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCA 140669 ||||| ||||| || || ||||| || || || ||||| || || | || || || || Sbjct 31397 AGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCG 31338 Query 140670 ATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAA 140729 |||| || || | || || || || |||| ||||| || || || || || || ||| Sbjct 31337 ATCGTGTCCGAGGACTCGACCTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAAA 31278 Query 140730 ATCTGC 140735 | ||| Sbjct 31277 CTGTGC 31272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515243896919423