Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20musarum_20[genbank_20GCA_5F001513885.1_202016-01-13] 541 sequences; 28,417,647 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq180 86.0 5e-12 >seq180 Length=32333 Score = 86.0 bits (94), Expect = 5e-12 Identities = 196/294 (67%), Gaps = 6/294 (2%) Strand=Plus/Plus Query 30061 CACGTAAAACTG---ACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTT 30117 |||||||||||| | ||||| || ||||| || || ||||| ||| || Sbjct 9222 CACGTAAAACTGCGCAAACATG---TGACACGGTGGCAGCGCCATCTTCTTCAAATCCGC 9278 Query 30118 GGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCAC 30177 || ||||| || | || ||||||||| | || | || | ||| | | || ||| Sbjct 9279 CGGATTCCACGCACTCATGATGATGCGTCGATCGTACGGAGTATTCTTCAGCTTGTGCAC 9338 Query 30178 GGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTC 30237 | | ||||||||| || ||| |||| |||||| | | | || ||||| Sbjct 9339 CACCTCCGCCAGCTGATCGACGCCCTGACCCGTGTAGTCCGTCTGCGCATCGACATACTC 9398 Query 30238 TGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTG 30297 ||| || ||||||| |||||||||||||||||| || |||| || ||||| ||| ||| Sbjct 9399 TGCGCCAAAATGCCGCCACTGGAACCCGTACACGGGGCCCAAATCGCCCTCAGCCCGGTG 9458 Query 30298 CTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTT 30351 | | |||| |||| | | | | || || ||| ||||||||||||| Sbjct 9459 GCCCAGGCCCACGCTGTCGAGGTACGCGCGCGACCCATTGCCGTCCCAGATCTT 9512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406307721017772