Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20musarum_20[genbank_20GCA_5F001513885.1_202016-01-13] 541 sequences; 28,417,647 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq180 98.7 9e-16 >seq180 Length=32333 Score = 98.7 bits (108), Expect = 9e-16 Identities = 190/274 (69%), Gaps = 6/274 (2%) Strand=Plus/Plus Query 6747 TGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCACGA 6806 |||| ||||| || ||||||||| | |||| ||| |||||||| | ||| | || Sbjct 9242 TGTGACACGGTGGCAGCGCCATCTTCTTCAAATCCGCCGGATTCCACGCACTCATGATGA 9301 Query 6807 TCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGCAGCTGGTCCGCTC 6866 | | || || | || | ||||| ||| | ||| | | |||||| || | | Sbjct 9302 TGCGTCGATCGTACGGAGTATTCTTCAGCTTGTGCACCACCTCCGCCAGCTGATCGACGC 9361 Query 6867 CCTGTCCCGAATAGTCCG-CTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTCCACTGG 6925 |||| |||| ||||||| || ||| | | |||||| || ||||| || | ||||||| Sbjct 9362 CCTGACCCGTGTAGTCCGTCTGCGCATCGAC-ATACTCTGCGCCAAAATGCCGCCACTGG 9420 Query 6926 AACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAA--CCCCCGCTTGTCCA 6983 |||||||| || |||||||| |||||||| |||| | | | ||| ||| |||| | Sbjct 9421 AACCCGTACACGGGGCCCAAATCGCCCTCAGCCCG-GTGGCCCAGGCCCACGC-TGTCGA 9478 Query 6984 GAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTT 7017 | | | || ||||| | ||||||||||||| Sbjct 9479 GGTACGCGCGCGACCCATTGCCGTCCCAGATCTT 9512 Score = 98.7 bits (108), Expect = 9e-16 Identities = 190/274 (69%), Gaps = 6/274 (2%) Strand=Plus/Minus Query 34328 AAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGG--TTCCCATCTC 34385 ||||||||||||| | ||||| || | | || |||| ||| ||| | | | | Sbjct 9512 AAGATCTGGGACGGCAATGGGTCGCGCGCGTACCTCGACA-GCGTGGGCCTGGGCCAC-C 9455 Query 34386 GGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGT 34445 ||| |||||||| |||||||| || ||||||||||||||| | || ||||| || |||| Sbjct 9454 GGGCTGAGGGCGATTTGGGCCCCGTGTACGGGTTCCAGTGGCGGCATTTTGGCGCAGAGT 9395 Query 34446 ATCGGGGGAGCGAAG-CGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATC 34504 || | | ||| || ||||||| |||| ||||| | || |||||| | | ||| | Sbjct 9394 AT-GTCGATGCGCAGACGGACTACACGGGTCAGGGCGTCGATCAGCTGGCGGAGGTGGTG 9336 Query 34505 GACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAG 34564 ||| ||||| | || | || || | ||| | ||| | |||||||| ||| | Sbjct 9335 CACAAGCTGAAGAATACTCCGTACGATCGACGCATCATCATGAGTGCGTGGAATCCGGCG 9276 Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACA 34598 ||| | ||||||||| || ||||| |||| Sbjct 9275 GATTTGAAGAAGATGGCGCTGCCACCGTGTCACA 9242 Score = 86.0 bits (94), Expect = 6e-12 Identities = 151/218 (69%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 6494 ATTTTGAGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATG 6553 || |||||| | ||||||| || ||||| || |||| ||| | | | ||| |||| | Sbjct 8893 ATCTTGAGCAGCGGGAACGCGCGCGGCTCGCGCTGCACCTGCACCTGCAGCGCGTCGACG 8952 Query 6554 TGGTTCAGGTAGATATGCGCATCCCCCA--ACGTATGCACCAGCTCCCCAGGAACCAACC 6611 |||| ||| | ||||| || |||| |||| || ||| || || || | Sbjct 8953 TGGTCGGCGTACACGTGCGCGTCGCCCATGACGT--GCGTCAGGCTGCCGGGTACGAGAT 9010 Query 6612 CCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCC 6671 | | || | |||| ||||| ||||||||| | ||| ||||||||||| ||||| | Sbjct 9011 CGGTGGCACGCGCGAGCATGTGCGTGAGCAGCGAGTACGAGGCAATGTTGAAGGGCACGC 9070 Query 6672 CTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAG 6709 | | |||||||| | ||| || || ||||| |||||| Sbjct 9071 CGAGGCCCATGTCGCACGAGCGCTGGTAGAGTTGGCAG 9108 Score = 86.0 bits (94), Expect = 6e-12 Identities = 151/218 (69%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 34636 CTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAG 34695 |||||| ||||| || || ||| | |||||||| | || ||||| ||||||||||| Sbjct 9108 CTGCCAACTCTACCAGCGCTCGTGCGACATGGGCCTCGGCGTGCCCTTCAACATTGCCTC 9049 Query 34696 TTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTGGT 34755 ||| | ||||||||| ||||| |||| | || | | | || || || ||| Sbjct 9048 GTACTCGCTGCTCACGCACATGCTCGCGCGTGCCACCGATCTCGTACCCGGCAGCCTGAC 8989 Query 34756 GCATACGT--TGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGGATCCAG 34813 || |||| |||| || ||||| | ||| ||||| |||| ||| | | | ||| Sbjct 8988 GC--ACGTCATGGGCGACGCGCACGTGTACGCCGACCACGTCGACGCGCTGCAGGTGCAG 8931 Query 34814 CTGCAACGAGAGCCCCGACCGTTCCCCCAGCTCAAAAT 34851 |||| || ||||| || ||||||| | |||||| || Sbjct 8930 GTGCAGCGCGAGCCGCGCGCGTTCCCGCTGCTCAAGAT 8893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448259368625520