Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thielaviopsis_20musarum_20[genbank_20GCA_5F001513885.1_202016-01-13]
541 sequences; 28,417,647 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq13 149 1e-30
seq88 120 7e-22
>seq13
Length=236849
Score = 149 bits (164), Expect = 1e-30
Identities = 153/200 (77%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
||| || | ||| |||||||||||||| || || || |||| ||||| |||| || ||
Sbjct 136100 ACGGAGACGCAGCACAAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGACAGTGT 136159
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| ||||| || |||||||| ||||| ||||| || || || ||||| || || |||||
Sbjct 136160 GCGGCCATCCTCCAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATACC 136219
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
|||||||| |||||||| ||| || ||||| ||||| || | |||||| || |
Sbjct 136220 CTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATAGTGTCGGAAGATTCCACCTCAAG 136279
Query 225672 CGTGATCGTCTTGCCCGTCA 225691
||||| |||||||||||||
Sbjct 136280 GGTGATGGTCTTGCCCGTCA 136299
Score = 140 bits (154), Expect = 8e-28
Identities = 155/207 (75%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
||| || | ||| || ||||| || || || || || |||| ||||| |||| || ||
Sbjct 135360 ACGCAGACGCAGAACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGTGT 135419
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| ||||| || |||||||| ||||| ||||| || || || ||||| || ||||| ||
Sbjct 135420 GCGGCCATCCTCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCCGGGGGAATGCC 135479
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
|||||||| |||||||| ||| ||| ||||||||||| |||| ||||| || |
Sbjct 135480 CTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCCGAGGACTCCACCTCCAG 135539
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698
||||| |||||||| || | ||| ||
Sbjct 135540 AGTGATGGTCTTGCCGGTAAGAGTCTT 135566
Score = 140 bits (154), Expect = 8e-28
Identities = 155/207 (75%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
||| || | ||| || ||||| ||||| || || || |||| ||||| || | | ||
Sbjct 135588 ACGGAGGCGCAGCACCAGGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGCGT 135647
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| |||||||| |||||||| |||||||| || || || || ||||| || ||||| ||
Sbjct 135648 GCGACCATCTTCAAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCCGGAGGAATGCC 135707
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
|||||||| |||||||| ||| ||| ||||||||||| |||| ||||| || |
Sbjct 135708 CTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCCGAGGACTCCACCTCCAG 135767
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698
||||| |||||||| || | ||| ||
Sbjct 135768 AGTGATGGTCTTGCCGGTAAGAGTCTT 135794
>seq88
Length=56780
Score = 120 bits (132), Expect = 7e-22
Identities = 141/191 (74%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585
|| |||| ||||| |||| || ||| | ||||| || |||||||| |||||||||||
Sbjct 28287 TTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 28228
Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645
|| || || || || || ||||| || ||||| || |||||||| ||| ||| |||
Sbjct 28227 AGGCGCTGCTGATCCGGGGGAATGCCCTCCTTATCCTGGATCTTGGACTTGACATTGTCG 28168
Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAAC 225705
|||||||| |||| || || || | || |||||||| ||||| | || || | |||
Sbjct 28167 ATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACGAAA 28108
Query 225706 ACTTGCATTTT 225716
| ||||| ||
Sbjct 28107 ATCTGCATCTT 28097
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192522933895454
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |