Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20musarum_20[genbank_20GCA_5F001513885.1_202016-01-13] 541 sequences; 28,417,647 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq13 113 1e-19 seq88 93.3 1e-13 >seq13 Length=236849 Score = 113 bits (124), Expect = 1e-19 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || || ||||||||||| || ||||||||||| || | | || | |||||| Sbjct 135598 AGCACCAGGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGACCATCT 135657 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || ||||| || || | ||||||||||| | || || ||||| || Sbjct 135658 TCAAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCC 135717 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || |||||| | || | | |||| || ||| || || ||||| || || Sbjct 135718 TGGATCTTGGACTTGACATTGTCGATGGTGTCCGAGGACTCCACCTCCAGAGTGATGGTC 135777 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || |||||||| || |||| |||||| Sbjct 135778 TTGCCGGTAAGAGTCTTGACAAAGATCTGCAT 135809 Score = 104 bits (114), Expect = 5e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || || || || ||||| || ||||||||||| |||| | || | ||||| Sbjct 135370 AGAACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGGCCATCC 135429 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| || | ||||||||||| | || || ||||| || Sbjct 135430 TCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 135489 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || |||||| | || | | |||| || ||| || || ||||| || || Sbjct 135490 TGGATCTTGGACTTGACATTGTCGATGGTGTCCGAGGACTCCACCTCCAGAGTGATGGTC 135549 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || |||||||| || |||| |||||| Sbjct 135550 TTGCCGGTAAGAGTCTTGACAAAGATCTGCAT 135581 Score = 91.5 bits (100), Expect = 3e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || ||||| || ||||||||||| || ||||||||||| |||| | || | ||||| Sbjct 136110 AGCACAAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGGCCATCC 136169 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| || | ||||||||||| | ||| || ||||| || Sbjct 136170 TCCAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATACCCTCCTTGTCC 136229 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || ||||| | || | |||| ||| || || ||||| || || || Sbjct 136230 TGGATCTTCGACTTGACGTTGTCGATAGTGTCGGAAGATTCCACCTCAAGGGTGATGGTC 136289 Query 152073 TTGCCCGT 152080 |||||||| Sbjct 136290 TTGCCCGT 136297 Score = 89.7 bits (98), Expect = 1e-12 Identities = 141/202 (70%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || || ||||||||||| || ||||||||||| || | | || | |||||| Sbjct 135826 AGCACCAGGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGACCATCT 135885 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || ||||| || | | ||||||||||| | || || ||||| || Sbjct 135886 TCAAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCC 135945 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || ||||| | || | | | || || ||| ||||| || || || || Sbjct 135946 TGGATCTTGGACTTGACGTTGTCGATGGTATCCGACGACTCGACTTCGAGGGTGATGGTC 136005 Query 152073 TTGCCCGTGAGAGTCTTCACGA 152094 ||||| ||||| ||||| |||| Sbjct 136006 TTGCCGGTGAGGGTCTTGACGA 136027 >seq88 Length=56780 Score = 93.3 bits (102), Expect = 1e-13 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATA 151976 || ||||||||||| |||| | ||| | ||||| || || || || |||||||| Sbjct 28287 TTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 28228 Query 151977 AGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCT 152036 || | |||||| |||| | || || ||||| || || || || |||||| | || Sbjct 28227 AGGCGCTGCTGATCCGGGGGAATGCCCTCCTTATCCTGGATCTTGGACTTGACATTGTCG 28168 Query 152037 ACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAG 152096 | | |||| || ||| || || || ||||| || || ||||| || ||||| ||||| Sbjct 28167 ATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACGAAA 28108 Query 152097 ACCTGCATTTT 152107 | |||||| || Sbjct 28107 ATCTGCATCTT 28097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153812802219011