Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03- 01] 76 sequences; 29,468,565 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq18 138 2e-27 >seq18 Length=597235 Score = 138 bits (152), Expect = 2e-27 Identities = 276/405 (68%), Gaps = 8/405 (2%) Strand=Plus/Minus Query 230237 CCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCA 230296 |||| || |||||||| || ||| ||||||| ||||| | || |||||| | | Sbjct 244459 CCATTTTCTGGCTGCGCAAGCGTGGTCTGATGCCCGGCCTGACCTTTTCCAACGAGCTGA 244400 Query 230297 TCAGTCGCGACGAGGGTCTCCATCAAC-AGTTCGGCGAGCTTATGTATTCAAAGCTCCAG 230355 | ||||||||||| || || || | | || | | || | | || || || | Sbjct 244399 TTTCGCGCGACGAGGGCCTGCA-CACCGACTTTGCCTGCCTGCTCTTCTC---GCACCTG 244344 Query 230356 AACAAGCTACCATTCGAGACGGTCA---AACAAATCATTACAGAAGCAGTTGAAAACGAA 230412 ||||| | || | ||| | ||| | ||||||| || || || || | | || Sbjct 244343 AACAACCGCCCCAGCAAGAAGCTCATTGAGGAAATCATCACTGATGCCGTCGTCATTGAG 244284 Query 230413 AAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACTTATG 230472 ||||||||| | ||| || | || || ||| | ||||||||||| || || ||| Sbjct 244283 AAGGAGTTCCTGACTGAGGCCCTGCCCTGCGCCCTGCTCGGCATGAACGCCGACCTCATG 244224 Query 230473 GGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTG 230532 |||||||| || || || |||||||| | | || || || || |||| || || Sbjct 244223 AAGCAGTACATTGAGTTTGTCGCCGACCGTCTGCTGGTGGCCCTCGGCAACGAAAAGGTC 244164 Query 230533 TACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAAC 230592 ||| ||| | ||||||||||| ||||||||| ||| ||||| || ||||||||| Sbjct 244163 TACCGCTCCACGAACCCCTTTGACTTTATGGAGAACATCTCGCTCGGTGGCAAGACCAAC 244104 Query 230593 TTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATG 230637 ||||| || |||||||| | ||||| |||| | | |||||| || Sbjct 244103 TTCTTTGAGAAGCGTGTTGGCGACTACCAGAAGGCCGGTGTGCTG 244059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057822969943880