Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03-
01] 76 sequences; 29,468,565 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq18 113 5e-20
>seq18
Length=597235
Score = 113 bits (124), Expect = 5e-20
Identities = 344/526 (65%), Gaps = 13/526 (2%)
Strand=Plus/Plus
Query 17000 ATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATC 17059
|| || ||||| ||||| |||| ||||||||| || || || | ||| || ||
Sbjct 244399 ATCAGCTCGTTGGAAAAGGTCAGGCCGGGCATCAGACCACGCTTGCGCAGCCAGAAAATG 244458
Query 17060 GCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCG 17119
| ||| || | || || ||||| || |||||||||| ||||| || | | || | |
Sbjct 244459 GAGGCAAAGGCGCCGGAGAAGAAGATGCCCTCGACGGCGGCAAAGGCCACCAGGCGCTGG 244518
Query 17120 GCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATG 17179
|| | |||| || | || |||||| || | |||| ||||| || | |||
Sbjct 244519 GCAAAGGTCGACTCGTGGTCGGCAATCCACTTGAGGGCCCAGTCGGCCTTGCGGCGGATG 244578
Query 17180 CAATCCATCGTTTCTATGGCCTTAAATAATTT-CT-CTTTTTCCTGTAGGTCGATTATAT 17237
|| || || || ||||| || || | | || | | | | | || | || |
Sbjct 244579 CAGGGAATGGTGTCGATGGCGTTGAACAGGTAGCTGCGCTGGGCGG--GCTCCTTGATGT 244636
Query 17238 ACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATC 17297
|||| |||||||| || |||| | |||||||| ||||||||||| ||||| || |
Sbjct 244637 ACGTGTCGATGAGCAGCGAGTACGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGC 244696
Query 17298 CGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTT 17357
|||| ||||| ||||| || | || || || || | |||| || || | || || |
Sbjct 244697 CGTAGAAGCAGCGGGCCTCAGGGATCTGGACCTCGCCTGAGAAGCGCTCAACCAGGTTCT 244756
Query 17358 CGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTT 17417
|||| || ||||| || ||||| || || || | | ||| ||||| || ||||
Sbjct 244757 CGTTGACAATGCCATCTGAGGCGGCAAAGAAGGCGAGGACGTGCGAGATGAAGTACTTTT 244816
Query 17418 CGTCCGGTGTAAGAACGCG------CCAGTCCTTTAAATCTTTGGATATATCCACTTCTT 17471
||||| ||| | ||| |||||| | | ||| ||||| | ||| | || |
Sbjct 244817 CGTCC-TTGT--TCATGCGGTTGTTCCAGTCGTGGAGATCCTTGGACAGATCAATCTCCT 244873
Query 17472 CGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAAT 17517
||| ||||| || ||| | ||||| || ||||| | ||| ||
Sbjct 244874 CGGCCGTCCAGAAGGACGCCTCGGCCTTCTTGTACATCTGCCAGAT 244919
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 517545108331680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |