Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03- 01] 76 sequences; 29,468,565 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq18 113 5e-20 >seq18 Length=597235 Score = 113 bits (124), Expect = 5e-20 Identities = 344/526 (65%), Gaps = 13/526 (2%) Strand=Plus/Plus Query 17000 ATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATC 17059 || || ||||| ||||| |||| ||||||||| || || || | ||| || || Sbjct 244399 ATCAGCTCGTTGGAAAAGGTCAGGCCGGGCATCAGACCACGCTTGCGCAGCCAGAAAATG 244458 Query 17060 GCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCG 17119 | ||| || | || || ||||| || |||||||||| ||||| || | | || | | Sbjct 244459 GAGGCAAAGGCGCCGGAGAAGAAGATGCCCTCGACGGCGGCAAAGGCCACCAGGCGCTGG 244518 Query 17120 GCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATG 17179 || | |||| || | || |||||| || | |||| ||||| || | ||| Sbjct 244519 GCAAAGGTCGACTCGTGGTCGGCAATCCACTTGAGGGCCCAGTCGGCCTTGCGGCGGATG 244578 Query 17180 CAATCCATCGTTTCTATGGCCTTAAATAATTT-CT-CTTTTTCCTGTAGGTCGATTATAT 17237 || || || || ||||| || || | | || | | | | | || | || | Sbjct 244579 CAGGGAATGGTGTCGATGGCGTTGAACAGGTAGCTGCGCTGGGCGG--GCTCCTTGATGT 244636 Query 17238 ACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATC 17297 |||| |||||||| || |||| | |||||||| ||||||||||| ||||| || | Sbjct 244637 ACGTGTCGATGAGCAGCGAGTACGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGC 244696 Query 17298 CGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTT 17357 |||| ||||| ||||| || | || || || || | |||| || || | || || | Sbjct 244697 CGTAGAAGCAGCGGGCCTCAGGGATCTGGACCTCGCCTGAGAAGCGCTCAACCAGGTTCT 244756 Query 17358 CGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTT 17417 |||| || ||||| || ||||| || || || | | ||| ||||| || |||| Sbjct 244757 CGTTGACAATGCCATCTGAGGCGGCAAAGAAGGCGAGGACGTGCGAGATGAAGTACTTTT 244816 Query 17418 CGTCCGGTGTAAGAACGCG------CCAGTCCTTTAAATCTTTGGATATATCCACTTCTT 17471 ||||| ||| | ||| |||||| | | ||| ||||| | ||| | || | Sbjct 244817 CGTCC-TTGT--TCATGCGGTTGTTCCAGTCGTGGAGATCCTTGGACAGATCAATCTCCT 244873 Query 17472 CGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAAT 17517 ||| ||||| || ||| | ||||| || ||||| | ||| || Sbjct 244874 CGGCCGTCCAGAAGGACGCCTCGGCCTTCTTGTACATCTGCCAGAT 244919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517545108331680