Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03- 01] 76 sequences; 29,468,565 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq3 158 1e-33 >seq3 Length=1108403 Score = 158 bits (174), Expect = 1e-33 Identities = 296/426 (69%), Gaps = 12/426 (3%) Strand=Plus/Minus Query 145849 CAGGAGAGCTCCCCGCC----CGCCACGTAGAACTG-GCACAGGAGGTGGCAGGGCGGCA 145903 |||| | ||| ||||| || |||||| ||||| ||| | | ||| || ||||||| Sbjct 700390 CAGGCGCGCTGCCCGCGGATACGACACGTAAAACTGCGCAAAC-ATGTGACACGGCGGCA 700332 Query 145904 GGGCCATGGCGGGCAGGTCCGCCGGGTTCCAGGCGGTGAGGACGA-GCCTCCTGCTCTCG 145962 | ||||| |||||| ||||||||||| ||| | | || || || || | || Sbjct 700331 GCGCCATCTTCTTCAGGTCTGCCGGGTTCCACGCGCTCATGATGATGCGTCGGTCGTACG 700272 Query 145963 GGGTTCCTCTTGATCTCCCCTATCAGGTCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAA 146022 | || |||| | || | || |||| |||||||| |||||||| || ||| Sbjct 700271 GCGTGT-TCTTCAGCTTGTGCACCACGTCCGCCAGCTGGTCGACGCCCTGGCCTGTGTAG 700213 Query 146023 TCTGTCTTGGAGTCCACGTACGCGGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGC 146082 || |||| | || || ||| |||| ||||| || | ||||||||| ||||| ||||| Sbjct 700212 TCGGTCTGCGCATCGACATACTCGGCGCCGAAATGGCGCCACTGGAAGCCGTACACGGGG 700153 Query 146083 CCCAGGTCCCCGGGCTCCCTGTGCCCCAGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCG 146142 |||||||| || | | ||| ||||| ||| | | | ||||| | | || |||||| Sbjct 700152 CCCAGGTCGCCCTCGGCGCGGTGGCCCAGGCCGACGCTGTCGAGGTACGCGCGCGACCCG 700093 Query 146143 TTGGCGTCCCAGATCTTGACGCC--CCTCGCGGAGAGCTCATTGGAGTCCGTGGACCCCC 146200 ||| ||||||||||||||| ||| |||||| ||| | || || |||| ||| Sbjct 700092 TTGCCGTCCCAGATCTTGATGCCGGCCTCGCTGAGCG-GCA-GCGACGACGTGCTGCCCT 700035 Query 146201 TGATGAACCAGAGCAGCTCTTCGAGGACCCCCCTCCAGAAGACCCTCTTGGTGGTCAGCA 146260 |||||||| |||||||| | | ||| ||| | ||| || | ||| || ||||||| Sbjct 700034 CAATGAACCACAGCAGCTCGGCAATCACCGCCCGCGTGAACACGCGCTTCGTCGTCAGCA 699975 Query 146261 GGGGGA 146266 | |||| Sbjct 699974 GCGGGA 699969 Score = 120 bits (132), Expect = 4e-22 Identities = 135/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 145671 CAGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTG 145730 || ||| | || ||| | || ||||||| | ||| ||||||||||| |||| |||||| Sbjct 700660 CACCTGCACCTGCAGCGCGTCGACGTGGTCGGCGTACACGTGCGCGTCGCCCATGACGTG 700601 Query 145731 GATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTA 145790 | | | |||||| ||||| | | | | |||| ||||| || ||||| ||||| Sbjct 700600 CGTCAGGCTGCCGGGCACGAGGTCGGCCGCGCGCGCGAGCATGTGCGTGAGCAGCGAGTA 700541 Query 145791 GCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCA 145850 || |||||||||||||| || || |||||||| | |||||||||||| |||||||| Sbjct 700540 CGACGCAATGTTGAAGGGCACGCCGAGGCCCATGTCGCACGAGCGCTGGTAGAGCTGGCA 700481 Query 145851 G 145851 | Sbjct 700480 G 700480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590076239427040