Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03-
01] 76 sequences; 29,468,565 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq18 374 9e-99
seq15 118 1e-21
seq5 118 1e-21
seq27 114 1e-20
>seq18
Length=597235
Score = 374 bits (414), Expect = 9e-99
Identities = 572/805 (71%), Gaps = 19/805 (2%)
Strand=Plus/Minus
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| |||||||| |||||||||||||| |||||||| | ||||||| | || |||
Sbjct 244919 ATCTGGCAGATGTACAAGAAGGCCGAGGCGTCCTTCTGGACGGCCGAGGAGATTGATCTG 244860
Query 116696 TCCAAGGA-CACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAA 116751
|||||||| | | | ||||||| | ||| ||||| | |||| | ||||||
Sbjct 244859 TCCAAGGATCTCCA-CGACTGGAACAACCGCATGAACAAGGACGAAAAGTACTTCATCTC 244801
Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811
|||||| || ||||| || |||||| || ||||| ||||||||||| ||||| |||||
Sbjct 244800 GCACGTCCTCGCCTTCTTTGCCGCCTCAGATGGCATTGTCAACGAGAACCTGGTTGAGCG 244741
Query 116812 TTTCGCTCAGG--AGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCC 116869
||| ||||| |||| ||| | | ||||| || |||||||||||||| ||||||
Sbjct 244740 CTTC--TCAGGCGAGGTCCAGATCCCTGAGGCCCGCTGCTTCTACGGCTTCCAGATCATG 244683
Query 116870 ATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT----GCGCTC 116925
||||||||| | ||||| || | ||| ||| ||||||||||||||| | | || |
Sbjct 244682 ATGGAGAACATCCACTCCGAGACGTACTCGCTGCTCATCGACACGTACATCAAGGAGCCC 244623
Query 116926 TTCGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAA 116985
| | | |||| | | ||| ||||||||||| || || || ||| || ||
Sbjct 244622 GCCCA--GCGCAGCTACCT--GTTCAACGCCATCGACACCATTCCCTGCATCCGCCGCAA 244567
Query 116986 GGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGT 117045
|||||| ||||| || ||||| |||| | ||| | |||| | | ||||||||||
Sbjct 244566 GGCCGACTGGGCCCTCAAGTGGATTGCCGACCACGAGTCGACCTTTGCCCAGCGCCTGGT 244507
Query 117046 GGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCT 117105
|||||| || |||||||||||| ||||||| || ||| || ||| |||| || |||||
Sbjct 244506 GGCCTTTGCCGCCGTCGAGGGCATCTTCTTCTCCGGCGCCTTTGCCTCCATTTTCTGGCT 244447
Query 117106 CAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGA 117165
|| || || || |||||||||||||| || ||||||||| || || | |||||
Sbjct 244446 GCGCAAGCGTGGTCTGATGCCCGGCCTGACCTTTTCCAACGAGCTGATTTCGCGCGACGA 244387
Query 117166 GGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGC 117225
||| ||||| |||||||||||| |||| ||| ||| || | || || |||
Sbjct 244386 GGGCCTGCACACCGACTTTGCCTGCCTGCTCTTCTCGCACCTGAACAACCGCCCCAGCAA 244327
Query 117226 GGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGA 117285
| || | | ||| ||| |||| || || |||| ||| ||| || ||||| || ||
Sbjct 244326 GAAGCTCATTGAGGAAATCATCACTGATGCCGTCGTCATTGAGAAGGAGTTCCTGACTGA 244267
Query 117286 AGCGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGT 117344
|| ||||| |||| ||||| || | || ||| ||| ||| ||||| ||||
Sbjct 244266 GGCCCTGCC-CTGCGCCCTGCTCGGCATGAACGCCGACCTCATGAAGCAGTACATTGAGT 244208
Query 117345 TCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACC 117404
| ||||||||| | |||||| | | || | | || ||| |||| | | | ||||
Sbjct 244207 TTGTCGCCGACCGTCTGCTGGTGGCCCTCGGCAACGAAAAGGTCTACCGCTCCACGAACC 244148
Query 117405 CGCTGGACTTTATGAACCTCATCTC 117429
| | ||||||||| | ||||||
Sbjct 244147 CCTTTGACTTTATGGAGAACATCTC 244123
>seq15
Length=634592
Score = 118 bits (130), Expect = 1e-21
Identities = 142/193 (74%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746
|| ||||| || ||||| || || || ||||| || || || ||| |||| || || ||
Sbjct 108652 AAGATGCAGATTTTCGTCAAGACCCTGACGGGTAAGACGATTACCCTCGAGGTTGAGTCC 108711
Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806
| |||| | | | | ||||| || || | ||||| |||||||| ||| ||||
Sbjct 108712 TCGGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGAT 108771
Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866
||||| || || |||| ||| ||||| |||||||| || | ||||| || |||||||
Sbjct 108772 CAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCCGACTAC 108831
Query 40867 AACATCCAGAAGG 40879
|||||||||||||
Sbjct 108832 AACATCCAGAAGG 108844
>seq5
Length=956377
Score = 118 bits (130), Expect = 1e-21
Identities = 150/204 (74%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || || || ||||| || ||||| ||||| || | || || || | |
Sbjct 899631 ATGCAGATCTTTGTCAAGACGCTGACTGGCAAGACCATTACGCTGGAGGTTGAGTCGTCG 899572
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|| | | | | |||| ||||| || |||| ||||| ||||| || ||| | |||||
Sbjct 899571 GATACCATTGACAACG-TCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCCCCTGACCA 899513
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || || |||| || || || |||||||| |||| ||||| ||| |||||||||
Sbjct 899512 GCAGCGTCTGATCTTTGCTGGTAAGCAGCTGGAGGACGGTCGCACGCTCTCCGACTACAA 899453
Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892
||||||||||||| | || |||||
Sbjct 899452 CATCCAGAAGGAGTCGACTCTGCA 899429
Score = 116 bits (128), Expect = 4e-21
Identities = 148/201 (74%), Gaps = 2/201 (1%)
Strand=Plus/Minus
Query 40700 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGC 40759
|||| || || || || ||||| ||||||||| |||| ||||| | | || | | |
Sbjct 900077 TCGTCAAGACCCTGACCGGCAAGACCATCACCCTCGAAGTCGAGTCGTCGGATACCATCG 900018
Query 40760 A-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818
| |||| ||||| || || | ||||| |||||||| || |||| ||||| || ||
Sbjct 900017 ACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCGGATCAGCAGCGCCTG 899959
Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878
|||| || ||||| ||||| || |||| ||||| || ||||||||||||||||||
Sbjct 899958 ATCTTTGCTGGCAAGCAGCTTGAGGACGGCCGCACTCTGTCTGACTACAACATCCAGAAG 899899
Query 40879 GAGGCCACGCTGCATCTAGTG 40899
||| |||| || || || |||
Sbjct 899898 GAGTCCACCCTCCACCTGGTG 899878
Score = 114 bits (126), Expect = 1e-20
Identities = 142/192 (74%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGA 40772
|||||||| ||||||||| | || || ||| | |||||| | | |||| |||||
Sbjct 900348 ACGGGCAAGACCATCACCCTTGAGGTGGAATCTTCCGACACTATCGACAACG-TCAAGTC 900290
Query 40773 AAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAA 40832
|| |||| ||||| ||||| || || |||| ||||| || || |||| || |||||
Sbjct 900289 CAAGATTCAGGACAAGGAGGGTATTCCTCCGGATCAGCAGCGTCTGATCTTTGCTGGCAA 900230
Query 40833 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892
||||| || |||| ||||| || ||||||||||||||||||||| |||| || ||
Sbjct 900229 GCAGCTTGAGGACGGCCGCACTCTGTCTGACTACAACATCCAGAAGGAGTCCACCCTCCA 900170
Query 40893 TCTAGTGTTGCG 40904
|| || ||||
Sbjct 900169 CCTCGTCCTGCG 900158
Score = 111 bits (122), Expect = 2e-19
Identities = 150/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || || || || || || ||||| ||||| || | || || || | ||
Sbjct 899859 ATGCAGATCTTTGTCAAGACTCTTACCGGCAAGACCATTACTCTGGAGGTGGAGTCATCC 899800
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | | ||| || |||| ||||| ||||| ||||| ||||||||
Sbjct 899799 GACACCATTGACAATGTGAAGTCGAAGATTCAGGACAAGGAGGGTATCCCTCCGGACCAG 899740
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| || ||||| | ||| ||||| ||||| || |||| ||||| ||| |||||||||
Sbjct 899739 CAGCGTCTCATTTTCGCCGGCAAGCAGCTCGAGGACGGTCGCACGCTCTCGGACTACAAC 899680
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
|| ||||||||| | || || || || ||
Sbjct 899679 ATTCAGAAGGAGTCTACTCTTCACCTGGT 899651
>seq27
Length=468876
Score = 114 bits (126), Expect = 1e-20
Identities = 136/182 (75%), Gaps = 2/182 (1%)
Strand=Plus/Minus
Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758
||||| || || || ||||| || ||||| ||| | || ||||| || | |||| |
Sbjct 115854 TTCGTCAAGACCCTGACGGGTAAGACCATTACCCTGGAGGTCGAGTCCTCGGACACGATC 115795
Query 40759 CA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACT 40817
| |||| ||||| || || | ||||| |||||||| ||| |||||||||| || ||
Sbjct 115794 GACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCT 115736
Query 40818 CATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAA 40877
|||| ||| ||||| ||||| || || | |||||||| |||||||||||| |||||
Sbjct 115735 GATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTGTCCGACTACAACATTCAGAA 115676
Query 40878 GG 40879
||
Sbjct 115675 GG 115674
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515218710541760
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