Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03- 01] 76 sequences; 29,468,565 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq15 132 4e-26 seq5 120 3e-22 seq18 118 9e-22 seq27 111 1e-19 >seq15 Length=634592 Score = 132 bits (146), Expect = 4e-26 Identities = 142/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 || || |||||||| ||| || |||||| |||||| ||||| || |||||| |||| Sbjct 108842 TTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 108783 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 || ||||||||||| || || |||||||||||||| || || || || | ||| Sbjct 108782 AGGCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 108723 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730 | |||||||| | ||| ||||||| ||| | ||| || || ||||| || || || ||| Sbjct 108722 ATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTCAGGGTCTTGACGAAA 108663 Query 118731 ATCTGCAT 118738 |||||||| Sbjct 108662 ATCTGCAT 108655 >seq5 Length=956377 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | |||||||| || ||||||||||| || | ||||| |||||| Sbjct 899651 ACCAGGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCCGAGAGCGTGCGACCGTCCTCG 899710 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || ||| | |||||||||||||| || ||||| || ||||||||||| | Sbjct 899711 AGCTGCTTGCCGGCGAAAATGAGACGCTGCTGGTCCGGAGGGATACCCTCCTTGTCCTGA 899770 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | || | |||||| | ||| ||||| | || | || ||| Sbjct 899771 ATCTTCGACTTCACATTGTCAATGGTGTCGGATGACTCCACCTCCAGAGTAATGGTCTTG 899830 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| ||||| || ||||| |||||||| Sbjct 899831 CCGGTAAGAGTCTTGACAAAGATCTGCAT 899859 Score = 118 bits (130), Expect = 9e-22 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||||| || ||||| || || |||||||| || || |||||| ||||| Sbjct 899878 CACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGGCCGTCCTC 899937 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || ||||| |||| || ||||||||||| ||||| |||||||||||||| Sbjct 899938 AAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGATCCGGAGGAATGCCCTCCTTGTCCTG 899997 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | |||| ||| |||| |||||| |||| ||| | || || Sbjct 899998 GATCTTGGACTTGACGTTGTCGATGGTATCCGACGACTCGACTTCGAGGGTGATGGTCTT 900057 Query 118709 GCCGGTCAGAGTTTTTAC 118726 ||||||||| || || || Sbjct 900058 GCCGGTCAGGGTCTTGAC 900075 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || ||||| || || |||||||| ||| | ||||| ||||| Sbjct 899423 ACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGACCGTCCTCC 899482 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || ||||| |||| ||||||||||| || || || || ||||||||||| | Sbjct 899483 AGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCAGGGGGAATACCCTCCTTGTCCTGA 899542 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | || | ||| |||| ||| ||||| | || | || ||| Sbjct 899543 ATCTTGGACTTGACGTTGTCAATGGTATCCGACGACTCAACCTCCAGCGTAATGGTCTTG 899602 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||| || || ||||| |||||||| Sbjct 899603 CCAGTCAGCGTCTTGACAAAGATCTGCAT 899631 Score = 95.1 bits (104), Expect = 1e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || ||||| || || |||||||| || || |||||| ||||| ||||| Sbjct 900169 GTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGGCCGTCCTCAAGCTG 900228 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || ||||| |||| |||||||||||||| ||||| || ||||||||||| ||| || Sbjct 900229 CTTGCCAGCAAAGATCAGACGCTGCTGATCCGGAGGAATACCCTCCTTGTCCTGAATCTT 900288 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | |||| ||||| | || ||||| | ||| | || ||||| || Sbjct 900289 GGACTTGACGTTGTCGATAGTGTCGGAAGATTCCACCTCAAGGGTGATGGTCTTGCCCGT 900348 Query 118715 CA 118716 || Sbjct 900349 CA 900350 >seq18 Length=597235 Score = 118 bits (130), Expect = 9e-22 Identities = 350/534 (66%), Gaps = 23/534 (4%) Strand=Plus/Minus Query 44778 TCGAGAATATGCCCTGCGTGCGCAGAAAGGCCGAATGGGCGATGAAGTATATTGACGATG 44837 |||| | || |||||| | ||| | |||||||| ||||| | |||| |||| ||| Sbjct 244594 TCGACACCATTCCCTGCATCCGCCGCAAGGCCGACTGGGCCCTCAAGTGGATTGCCGACC 244535 Query 44838 AAAAGATAACTTTGGCCGAACGATTGGTCGCATTCGCCATTGTCGAAGGAGTGTTCTTTT 44897 | || || || ||| | || |||| || || ||| ||||| || | ||||| | Sbjct 244534 ACGAGTCGACCTTTGCCCAGCGCCTGGTGGCCTTTGCCGCCGTCGAGGGCATCTTCTTCT 244475 Query 44898 CGGGGAGTTTTGCGGCGATATTTTACATGAAAACCAAGGGAG---TGATGCCCGGACTGA 44954 | || ||||| | || || | || |||| | | |||||||||| |||| Sbjct 244474 CCGGCGCCTTTGCCTCCATTTTCTGGCTGCG---CAAGCGTGGTCTGATGCCCGGCCTGA 244418 Query 44955 CGTTTAGCAACGAATTGATTTCGAGAGACGAAGGTCTGCACACCAACTTTGCCTGCCT-C 45013 | ||| |||||| |||||||| | ||||| || ||||||||| ||||||||||||| | Sbjct 244417 CCTTTTCCAACGAGCTGATTTCGCGCGACGAGGGCCTGCACACCGACTTTGCCTGCCTGC 244358 Query 45014 TACTATAATACGAGAGTCGA--TCAAAAGTTGGACGCGCCCACCGTCAACGACATGTTCT 45071 | | | || || | | | || || || | | | || || || Sbjct 244357 TCTTCTCGCACCTGA-ACAACCGCCCCAGCAAGAAGC-----TCATTGAGGAAATCATCA 244304 Query 45072 CCGAAGCCGTGGCCATCGAGATGGAATTTTTTGCTGAGGCTCTGCCCGAATCGTTGGTGG 45131 | || ||||| | ||| |||| ||| || | ||||||| |||||| | || | | Sbjct 244303 CTGATGCCGTCGTCATTGAGAAGGAGTTCCTGACTGAGGCCCTGCCCTGCGCCCTGCTCG 244244 Query 45132 GAATGAACGCGAATATGATGAGAAAGTACATTGAGTTTGTCGCCGATCGTCTTCTCGT-- 45189 | |||||||| | | |||| |||||||||||||||||||||| ||||| || || Sbjct 244243 GCATGAACGCCGACCTCATGAAGCAGTACATTGAGTTTGTCGCCGACCGTCTGCTGGTGG 244184 Query 45190 --CCAGTTAAAGTATCCCAAGATGTACTATACTGAGAACCCATTCGAGTTTATGAACAAT 45247 | | || | | ||| | ||| | |||||| || || |||||| | || Sbjct 244183 CCCTCGGCAACGAA----AAGGTCTACCGCTCCACGAACCCCTTTGACTTTATGGAGAAC 244128 Query 45248 ATTTCGTTGGAGGGCAAAACTAAtttttttGAGAAACGCGTCGGCGAATACAAG 45301 || ||| | | ||||| || || || |||||||| || || ||||| ||| || Sbjct 244127 ATCTCGCTCGGTGGCAAGACCAACTTCTTTGAGAAGCGTGTTGGCGACTACCAG 244074 >seq27 Length=468876 Score = 111 bits (122), Expect = 1e-19 Identities = 136/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 || ||||||||||| ||| || ||||| |||||||||||| || |||||| |||| Sbjct 115676 TTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATC 115735 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 || |||||||| || || || |||||||||||||| || || || || | ||| Sbjct 115736 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCG 115795 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730 | ||||||| | ||||||||| | ||| | || || || ||||| || || || ||| Sbjct 115796 ATCGTGTCCGAGGACTCGACCTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAAA 115855 Query 118731 ATCTGC 118736 | ||| Sbjct 115856 CTGTGC 115861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433829998164592