Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03- 01] 76 sequences; 29,468,565 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq5 129 5e-25 seq15 107 2e-18 >seq5 Length=956377 Score = 129 bits (142), Expect = 5e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||||||||| || ||||||||| |||||||||||| || |||| |||| ||| Sbjct 899423 ACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGACCGTCCTCC 899482 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || |||| ||||| ||||| || || | ||||||||||||| | Sbjct 899483 AGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCAGGGGGAATACCCTCCTTGTCCTGA 899542 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | ||| ||| ||||||| ||||| |||||| Sbjct 899543 ATCTTGGACTTGACGTTGTCAATGGTATCCGACGACTCAACCTCCAGCGTAATGGTCTTG 899602 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| ||||| |||||||| ||||| Sbjct 899603 CCAGTCAGCGTCTTGACAAAGATCTGCAT 899631 Score = 129 bits (142), Expect = 5e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || || ||||||||||||||||||||| || |||| |||| || Sbjct 899651 ACCAGGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCCGAGAGCGTGCGACCGTCCTCG 899710 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || |||||||| || | ||||| ||||| ||||| | ||||||||||||| | Sbjct 899711 AGCTGCTTGCCGGCGAAAATGAGACGCTGCTGGTCCGGAGGGATACCCTCCTTGTCCTGA 899770 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| ||||||||||| ||||| |||||| Sbjct 899771 ATCTTCGACTTCACATTGTCAATGGTGTCGGATGACTCCACCTCCAGAGTAATGGTCTTG 899830 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || |||||||| |||||||| ||||| Sbjct 899831 CCGGTAAGAGTCTTGACAAAGATCTGCAT 899859 Score = 86.0 bits (94), Expect = 5e-12 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| ||||||||| ||||||||||| ||| ||| |||| || || || Sbjct 900169 GTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGGCCGTCCTCAAGCTG 900228 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || || || |||| ||||| || || ||||| | ||||||||||||| ||| || Sbjct 900229 CTTGCCAGCAAAGATCAGACGCTGCTGATCCGGAGGAATACCCTCCTTGTCCTGAATCTT 900288 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | |||| | |||||||| | ||| || ||||||||||| Sbjct 900289 GGACTTGACGTTGTCGATAGTGTCGGAAGATTCCACCTCAAGGGTGATGGTCTTGCCCGT 900348 Query 45313 CA 45314 || Sbjct 900349 CA 900350 >seq15 Length=634592 Score = 107 bits (118), Expect = 2e-18 Identities = 151/211 (72%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 45130 CAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAG 45189 || ||| ||| |||| ||||||| |||||||||||| ||| ||| | || ||||| Sbjct 108860 CATGTGAAGC-TGCTGACCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCCAG 108802 Query 45190 TTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAAT 45249 || || || ||||| |||| ||||| || || || || | |||||||||||| || Sbjct 108801 CTGCTTGCCAGCGAAGATCAGGCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGGAT 108742 Query 45250 TTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCC 45309 || ||| || | | | ||||| ||| ||||| | |||||||||||| || Sbjct 108741 CTTGGACTTGACATTGTCGATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACC 108682 Query 45310 CGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 |||||| ||||| || || || ||||| ||| Sbjct 108681 CGTCAGGGTCTTGACGAAAATCTGCATCTTG 108651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395074834061596