Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03- 01] 76 sequences; 29,468,565 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq53 435 3e-117 seq18 259 4e-64 seq15 100 3e-16 seq5 89.7 5e-13 >seq53 Length=159929 Score = 435 bits (482), Expect = 3e-117 Identities = 1244/1892 (66%), Gaps = 46/1892 (2%) Strand=Plus/Plus Query 22105 CTTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCC 22164 || |||||| || ||||| |||| || || | | || || || || |||||||| Sbjct 97736 CTGGTCCACAGTGAACTGGATGGGCGCAGCAGCAGCCTGCGTACGCAGGTAGTACATGCC 97795 Query 22165 CGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTT--CCATAACTC 22222 |||||| ||||||| |||||| | ||| || || || ||| || |||| | Sbjct 97796 CGTCTTGAGACCCAGCTTCCAGCCCGCAAAGTGCATGCTGGT-AATCTTGCCCATGG-TA 97853 Query 22223 GGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCG 22282 || | ||||| | |||| |||||| ||| || || |||||||| || ||||| Sbjct 97854 GGGTCCTTCATGTGGATGTTGAGCGACTGCGACTGGTCAATGAACGCTCCGCGGTCGGCA 97913 Query 22283 GCCATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATC 22342 ||||| | | | || ||| ||| || ||||| || ||||||||||| | |||| Sbjct 97914 GCCATCTGCACAACCGTGCGCTGCGAAATCTCCCACACCGTCTTGTACAGCATCTTGATG 97973 Query 22343 TCTAACGGTATCGATTCGA-TCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTT 22401 || || || | | || | |||||| |||||||| | ||||| || || Sbjct 97974 TCATCGGGGAT-GCTGGGAATGTTCTGGATCGACCCGTTCTCCGCAATGATGCGGTTCTT 98032 Query 22402 AATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCAC 22461 || |||| ||||| ||| | | | ||| || | ||| |||| || || Sbjct 98033 CATGTTATCCGACCACAGACCCAGGTCCACCAAGTCGCGCAGCAGCCACGGGTTGACAAC 98092 Query 22462 TTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGA 22521 || |||||||| | || || ||||| |||||||||||||| || |||| ||||| | Sbjct 98093 CTGGAACTCGCCAGCCAGCACACGGCGCTGGTAAATGTTGGAAGTATACGGCTCGAAGCA 98152 Query 22522 TTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGA 22581 || ||||| ||||| ||||| | || || |||||||||||||| | ||| ||||| Sbjct 98153 CTCGTTGTTGCCCAGAATCTGCGACGTGCTGGCCGTCGGCATCGGCGCAAGCAGCAGCGA 98212 Query 22582 GTTTCTCAAGCCGTGCT--TTGAAATTTTACTC-TTGAGCATCGACCAGTCCCACAGATC 22638 ||| | || || |||| |||| | | ||| |||||| | ||||||||| || || Sbjct 98213 GTTGCGCACACCATGCTGCTTGA---TCTGCTCCTTGAGCGATGCCCAGTCCCAGAGGTC 98269 Query 22639 GGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCC 22698 | ||||| || || |||||| || | |||| | ||| | | || ||| Sbjct 98270 GCTGGGCGTGACGTT---CCACATGTCAAACTGCAGAATGCCCTGGGAAACAGGCGAGCC 98326 Query 22699 TTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCT-CGCCTCCAACGCGC 22757 |||||||| ||||| || | | |||| || || | |||| || || Sbjct 98327 CTCGTACGTAGAGTACGTTCCCTCCTCCTGCGCAATCTC-CATCGACGCCGTCAGAGCAG 98385 Query 22758 CGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCG---GCGGCGGC-GACGCTTTCG 22813 ||| || || ||||| ||||||| | |||| | | | || |||| ||| || Sbjct 98386 CGTGGTAGATGGTCTCAAAGATTTGCGTGTTGAGCTTGCGAGCCTCGGCCGAC----TCA 98441 Query 22814 TACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGT 22873 | ||||| || | | || ||| || ||||||| ||||| || || | ||| || || Sbjct 98442 AAAGGCATGCGAAGCGCCAAGAAGGCATCCGCCAGGCCCTGGACACCAACACCAATAGGG 98501 Query 22874 CGGTTTTTCAGATTCGACACTTTTGC--CTCGGGCAAAGGATACCAATTCGAATCGATTG 22931 |||| || || | || ||| |||||||| || || || || || Sbjct 98502 CGGTGGCGCATGTTG--CTGTTCTGCGCCTCGGGCACGGGGTAGTGGTTGACGTCAATGA 98559 Query 22932 TTCTGTTCAAGTTTCTGGTCACAATT---TTCGTTATNNNNNNNNNNNNNTCAAAGTCGT 22988 | | ||||| ||| | ||||| | || || | | ||||||| Sbjct 98560 TGCGGTTCAGGTTGCG---CACAACTACCTTGGTGACCTCGTGCAGCTTCTGGAAGTCGT 98616 Query 22989 AAACGCCCGA-TTGTA--CAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGG 23045 | || | ||||| | |||||| | || | ||| || || ||||| |||| Sbjct 98617 ACTCGTTCTTGTTGTAGTCGACAAACGACGGCAGAGCCAGCGAAGCCAGGTTGCACACGG 98676 Query 23046 CCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCG 23105 | ||||| || | |||||| | ||| || || || || ||| | || | Sbjct 98677 CAACCTCATCCGGCGCACAGTACTCGATAATCTCCGTGCACAGGTTGGAGCTGCGGATGG 98736 Query 23106 TGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCG 23165 |||||| || |||||||||| || || ||||| |||||||| |||||| |||| Sbjct 98737 TGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTACAGCATGAACGGGT 98796 Query 23166 TGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTC 23225 |||| |||||| ||||| ||| | || || ||||| |||| || | | || Sbjct 98797 TGCCAGTCTCGGTCTGCGCCTCCAGAATGGCGTACCACAGCTTCTGGGCCTTGAT-CGAG 98855 Query 23226 GCACGTAC-CTGCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAA 23284 ||||| | | ||| || | ||||||||||| ||||| ||| ||||| || | ||||| Sbjct 98856 GCACGACCGCGGCCCTCCTGCTCGTACTTTTCGTACAGCGCCTCAAACTCCTCGCCGTAG 98915 Query 23285 CAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCA 23344 |||||||||||||| || | | | || ||||| ||| |||| | || || || Sbjct 98916 CAGTCGGCCAGGCCAGGGCACTCGTTGGGGCACATCAGAGTCCAGTCAGCGTTCTTCTCG 98975 Query 23345 ACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACC 23404 || || |||| || || || || ||||| ||||| ||| || || |||||||| ||| Sbjct 98976 ACACGCTTCATGAACAGGTCAGGGATCCACAGAGCCAGGAAAAGATCACGGGCGCGAACC 99035 Query 23405 TCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGC 23464 || || |||||| |||||| || || | || || ||||| || || ||||||||| Sbjct 99036 TCTTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAACTCAAACACATCGGCGTGCCACGGC 99095 Query 23465 TCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCC 23524 || ||||||| |||||| || || || | ||| ||||| ||||| |||||||| ||||| Sbjct 99096 TCCAGGTAAATGGCAAAGGCACCGGGGCGCTTGTTGCCACCCTGGTCGACGTAGCGGGCA 99155 Query 23525 GTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCC 23584 |||||||| |||| | ||||| || | || |||||||| | ||| ||| || Sbjct 99156 GTGTTGTTAAACACACGCAGCATGGGAATGATGCCGTTGGAGGTACCGTTGGTGCCGGCA 99215 Query 23585 ACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTC 23644 | ||| || | || || | | ||| || | || ||| || || || || || Sbjct 99216 ATGTACGAGCCCGTGGCGCGGATGCGGTGGACATTGAGACCGATACCACCCGCCATCTTG 99275 Query 23645 GATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTC 23704 || ||||| || || || || || ||||| |||||||| || |||||| || | Sbjct 99276 GAGATCATAGCACAGGTCTTGAGGGTATCGTAAATGCCCTCAATCGAGTCCTCCTTCATG 99335 Query 23705 GCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGG 23764 |||||| ||| || || |||| || || | ||||||| | || |||||| || || Sbjct 99336 TCGACCAGGAAGCAAGACGACAGCTGGGCCTGGGGCGTACCAGCGTTGAACAGCGTGGGC 99395 Query 23765 CTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAA-- 23822 ||| || || ||| | ||||||| || |||||||| || ||| || ||| | Sbjct 99396 GAGGCATGGGTGAAGAACTTGCTCGACATGAGGTTGTACGTCTCAATGACGCGATCGACT 99455 Query 23823 -TGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACC 23881 |||| | | | || || | || || ||||| ||||||| || || | |||||| Sbjct 99456 CTGTCGCCCCAG---ATGCCAACAGCCACACGCATAATCATGTGCTGGGGACGCTCGACA 99512 Query 23882 GTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCA 23941 | ||||| | || ||||| || || || | || || || || ||||| || | Sbjct 99513 ATCTTGCCGTCCAGCTTCAACAGGTACGAGCGCTCCAGGGTCTTGAAGCCAAAGTACTGG 99572 Query 23942 TAGTTAAAGTCACGATCGTGCACTATGGCCGA 23973 ||||| |||||||| |||| ||| ||||| || Sbjct 99573 TAGTTGAAGTCACGGTCGTACACAATGGCAGA 99604 >seq18 Length=597235 Score = 259 bits (286), Expect = 4e-64 Identities = 590/877 (67%), Gaps = 23/877 (3%) Strand=Plus/Minus Query 57564 CCAGACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTA 57623 ||| | || ||| | |||||||| ||||| || || || || ||||| | ||| || | Sbjct 244925 CCACAGATCTGGCAGATGTACAAGAAGGCCGAGGCGTCCTTCTGGACGGCCGAGGAGATT 244866 Query 57624 GACCTGTCTAAGGATCTGAGCGATTGGGATTCCCTCA--AAGAATCTGA-GAGAAAT--T 57678 || ||||| |||||||| ||| ||| | || || || || || || || | | Sbjct 244865 GATCTGTCCAAGGATCTCCACGACTGGAACAACCGCATGAACAAG--GACGAAAAGTACT 244808 Query 57679 TTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGG 57738 | || ||||| | || || || ||||| || ||||| ||||| |||||||| ||| Sbjct 244807 TCATCTCGCACGTCCTCGCCTTCTTTGCCGCCTCAGATGGCATTGTCAACGAGAACCTGG 244748 Query 57739 TCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAG 57798 | || | || ||| || || || | | ||||| | ||||| ||||| || || Sbjct 244747 TTGAGCGCTTCTCAGGCGAGGTCCAGATCCCTGAGGCCCGCTGCTTCTACGGCTTCCAGA 244688 Query 57799 TGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGG 57858 | || || ||| | || || || | ||| ||||| |||||||| |||||| | |||| Sbjct 244687 TCATGATGGAGAACATCCACTCCGAGACGTACTCGCTGCTCATCGACACGTACATCAAGG 244628 Query 57859 ACAACGACGAGAAACGTAGA---CTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCA 57915 | || | || || || ||||||||||| ||||| || || ||| ||| | Sbjct 244627 AGCCCGCCCAG---CGCAGCTACCTGTTCAACGCCATCGACACCATTCCCTGCATCCGCC 244571 Query 57916 AGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCG-CCACGG--CCACGTTCGCCGAGA 57972 ||||| || ||| | |||| ||||| || ||||| | || || ||| || Sbjct 244570 GCAAGGCCGACTGGGCCCTCAAGTGGATTGC---CGACCACGAGTCGACCTTTGCCCAGC 244514 Query 57973 GGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATAT 58032 | || | || || ||||||||||| || || ||||| || ||| |||||| | || | Sbjct 244513 GCCTGGTGGCCTTTGCCGCCGTCGAGGGCATCTTCTTCTCCGGCGCCTTTGCCTCCATTT 244454 Query 58033 TTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGC 58092 | ||| || || || || ||||||||||||||||| ||| ||||||| |||| |||| Sbjct 244453 TCTGGCTGCGCAAGCGTGGTCTGATGCCCGGCCTGACCTTTTCCAACGAGCTGATTTCGC 244394 Query 58093 GCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAAC 58152 |||||||||| || || || || ||||| ||||| | | ||| ||| | ||| | Sbjct 244393 GCGACGAGGGCCTGCACACCGACTTTGCCTGCCTGCTCTTCTCGCACCTGAACAACCGCC 244334 Query 58153 CGACGCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTG 58212 | | | | | ||| ||| || ||||| || || |||| || || || ||||| Sbjct 244333 CCAGCAAGAAGCTCATTGAGGAAATCATCACTGATGCCGTCGTCATTGAGAAGGAGTTCC 244274 Query 58213 TCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACA 58272 | || || ||||| || ||| ||||||| |||||| || | ||| |||||| Sbjct 244273 TGACTGAGGCCCTGCCCTGCGCCCTGCTCGGCATGAACGCCGACCTCATGAAGCAGTACA 244214 Query 58273 TTGAGTTTGTTGCCGACAGACTTTTGCTCGAACT--GATTGGAGAGCGTCATTACAACAC 58330 |||||||||| |||||| | || || | | || | || | ||| ||| | | Sbjct 244213 TTGAGTTTGTCGCCGACCGTCTGCTGGTGGCCCTCGGCAACGAAAAGGTC--TACCGCTC 244156 Query 58331 GAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGa 58390 | || || ||||| |||||| | |||||||||| |||||||| ||||| || || Sbjct 244155 CACGAACCCCTTTGACTTTATGGAGAACATCTCGCTCGGTGGCAAGACCAACTTCTTTGA 244096 Query 58391 aaaaaaaGTTAGCGAATATCAAAAATACGGCGTGATG 58427 || ||| |||| || || || ||| ||| || Sbjct 244095 GAAGCGTGTTGGCGACTACCAGAAGGCCGGTGTGCTG 244059 >seq15 Length=634592 Score = 100 bits (110), Expect = 3e-16 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| ||||| ||||| || || ||||| ||| |||| ||||| | Sbjct 108652 AAGATGCAGATTTTCGTCAAGACCCTGACGGGTAAGACGATTACCCTCGAGGTTGAGTCC 108711 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || |||| |||| | ||||| | || ||||||||| ||| | || || || Sbjct 108712 TCGGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGAT 108771 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||||| || || ||||||||||| ||| |||| || Sbjct 108772 CAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGA 108809 >seq5 Length=956377 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || |||||||| || ||||| || || || | || || || | ||| Sbjct 899859 ATGCAGATCTTTGTCAAGACTCTTACCGGCAAGACCATTACTCTGGAGGTGGAGTCATCC 899800 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || || || ||||||||| || | || || |||||| Sbjct 899799 GACACCATTGACAATGTGAAGTCGAAGATTCAGGACAAGGAGGGTATCCCTCCGGACCAG 899740 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || ||||| ||||| ||| | || ||| | || | || || ||| Sbjct 899739 CAGCGTCTCATTTTCGCCGGCAAGCAGCTCGAGGACGGTCGCACGCTCTCGGACTACAAC 899680 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || || |||||||| ||||| || Sbjct 899679 ATTCAGAAGGAGTCTACTCTTCACCTGGTTCT 899648 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| ||||| ||||| || || || | || ||||| |||| Sbjct 899631 ATGCAGATCTTTGTCAAGACGCTGACTGGCAAGACCATTACGCTGGAGGTTGAGTCGTCG 899572 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | ||||| | || ||||||||| || | || || |||||| Sbjct 899571 GATACCATTGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCCCCTGACCAG 899512 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || || ||||| || ||| |||| ||| | || | ||| || ||| Sbjct 899511 CAGCGTCTGATCTTTGCTGGTAAGCAGCTGGAGGACGGTCGCACGCTCTCCGACTACAAC 899452 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || || |||||||| || |||| || Sbjct 899451 ATCCAGAAGGAGTCGACTCTGCACTTGGTTCT 899420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445765976521920