Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03- 01] 76 sequences; 29,468,565 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq53 102 2e-16 >seq53 Length=159929 Score = 102 bits (112), Expect = 2e-16 Identities = 181/259 (70%), Gaps = 4/259 (2%) Strand=Plus/Plus Query 94786 CCGAGTCCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTATCATAAATACCC 94845 |||| || || || |||||||||| || || ||| || ||||| ||||| ||| Sbjct 99255 CCGATACCACCCGCCATCTTGGAGATCATAGCACAGGTCTTGAGGGTATCGTAAATGCCC 99314 Query 94846 TCAATGCTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTGGGG-TGTGACTGT 94904 ||||| || || | | | | | |||||||| || || || |||| || | | || Sbjct 99315 TCAATCGAGTCCTCCTTCATGTCGACCAGGAAGCAAGACGACAGCTGGGCCTGGGGC-GT 99373 Query 94905 TCCACAATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGATCATA 94964 ||| || ||||| ||||| || |||||||| || | | ||||||||||| | || Sbjct 99374 ACCAGCGTTGAACAGCGTGGGCGAGGCATGGGTGAAGAACTTGCTCGACATGAGGTTGTA 99433 Query 94965 TGTTTCAATGACAGATTTGATGTCTG-ATCCGTGAATGCCGACAGCCACACGCATAATCA 95023 || |||||||| | || |||| || ||||| ||||||||||||||||||| Sbjct 99434 CGTCTCAATGACGCGATCGA-CTCTGTCGCCCCAGATGCCAACAGCCACACGCATAATCA 99492 Query 95024 TGTCCTGAGGGCGCTCAAC 95042 ||| ||| || ||||| || Sbjct 99493 TGTGCTGGGGACGCTCGAC 99511 Score = 93.3 bits (102), Expect = 8e-14 Identities = 112/153 (73%), Gaps = 12/153 (8%) Strand=Plus/Plus Query 94407 CTCATATTTCTCGTACAACGCCTTAAACTCTTCGCCATGGACGTCGGAAAGGCCAGGGCA 94466 ||| || || ||||||| ||||| |||||| ||||| | | ||||| ||||||||||| Sbjct 98876 CTCGTACTTTTCGTACAGCGCCTCAAACTCCTCGCCGTAGCAGTCGGCCAGGCCAGGGCA 98935 Query 94467 CTCGTGGGGGCACATCAGGGACCAATTCTTCCCAGCCTTC------ACTCTCTCCATGAA 94520 ||||| |||||||||||| | ||| | |||| ||| || | || |||||| Sbjct 98936 CTCGTTGGGGCACATCAGAGTCCAGT------CAGCGTTCTTCTCGACACGCTTCATGAA 98989 Query 94521 GAGATCAGATACCCAGATAGCTGGGAAAAGATC 94553 || |||| | ||| | ||| |||||||||| Sbjct 98990 CAGGTCAGGGATCCACAGAGCCAGGAAAAGATC 99022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989583036392580