Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03- 01] 76 sequences; 29,468,565 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq3 132 4e-26 >seq3 Length=1108403 Score = 132 bits (146), Expect = 4e-26 Identities = 215/303 (71%), Gaps = 10/303 (3%) Strand=Plus/Minus Query 21110 CACGTAAAACTGACACAAA-ACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGG 21168 |||||||||||| | |||| | |||||| || || || |||||| | ||||| || | Sbjct 700366 CACGTAAAACTG-CGCAAACATGTGACACGGCGGCAGCGCCATCTTCTTCAGGTCTGCCG 700308 Query 21169 GGTTCCACGCGCACATAACGATGCGCCGATCGTGGGGCCGCCTGTTAATTAG---ATCCA 21225 |||||||||||| ||| | |||||| || |||| | || |||| | || | || Sbjct 700307 GGTTCCACGCGCTCATGATGATGCGTCGGTCGT---ACGGCGTGTTCTTCAGCTTGTGCA 700251 Query 21226 CCACGTAACGCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACT 21285 |||||| ||||||||| || ||||| || ||||| || | || | |||| Sbjct 700250 CCACGTCCGCCAGCTGGTCGACGCCCTGGCCTGTGTAGTCGGTCTGCGCATCGACATACT 700191 Query 21286 CCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCCCTCGCGGCGGT 21345 | || || ||||| | ||||||||| |||||||| || ||||| ||||||||| ||||| Sbjct 700190 CGGCGCCGAAATGGCGCCACTGGAAGCCGTACACGGGGCCCAGGTCGCCCTCGGCGCGGT 700131 Query 21346 CCCCGAAGCCCTGCGCCG-CCAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATTTTTACG 21404 || || || ||| | | | | ||||| ||||||| ||||||| || || | | Sbjct 700130 GGCC-CAGGCCGACGCTGTCGAGGTACGCGCGCGACCCGTTGCCGTCCCAGATCTTGATG 700072 Query 21405 CCG 21407 ||| Sbjct 700071 CCG 700069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427775603772480