Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03- 01] 76 sequences; 29,468,565 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq18 129 4e-25 >seq18 Length=597235 Score = 129 bits (142), Expect = 4e-25 Identities = 284/419 (68%), Gaps = 14/419 (3%) Strand=Plus/Minus Query 22748 TGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGC 22807 |||||||||| || || || ||| || | || || || | ||||| |||| ||||||| Sbjct 244507 TGGCCTTTGCCGCCGTCGAGGGCATCTTCTTCTCCGGCGCCTTTGCCTCCATTTTCTGGC 244448 Query 22808 TGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACG 22867 || || ||| || ||||| || || | |||||||||||| ||||| || |||| Sbjct 244447 TGCGCAAGCGTGGTCTGATGCCCGGCCTGACCTTTTCCAACGAGCTGATTTCGCGCGACG 244388 Query 22868 AAGGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCAAACAAACCGTGTC 22927 | || || ||| |||||||| || |||| || ||| || ||| ||||| | Sbjct 244387 AGGGCCTGCACACCGACTTTGCCTGCCTGCTCTTCTCGCACCTG---AAC-AACCGCCCC 244332 Query 22928 AGGACGATGCACAT----CAAATCATATCTGATGCCGTTGACATTGAGACGGCTTTCTTC 22983 || | || || ||| ||||||| |||||||||| | |||||||| || ||| | Sbjct 244331 AGCAAGAAGCTCATTGAGGAAATCATCACTGATGCCGTCGTCATTGAGAAGGAGTTCCTG 244272 Query 22984 CAAGAGGCACTAAAGACACCCCTACTTGGTATGAATAGTGACAGTATGAGACTGTACATA 23043 ||||| || |||| || || ||||| ||| |||| | |||||| Sbjct 244271 ACTGAGGCCCTGCCCTGCGCCCTGCTCGGCATGAACGCCGACCTCATGAAGCAGTACATT 244212 Query 23044 CAGTTTGTTGCAGATCGCCTGCTCGATGCCCTGGGTTATGCAAAGATGTATAACGTT--G 23101 ||||||| || || || ||||| | ||||| || | | |||| || || || | Sbjct 244211 GAGTTTGTCGCCGACCGTCTGCTGGTGGCCCTCGGCAACGAAAAG--GTCTACCGCTCCA 244154 Query 23102 CCAATCCATTTGATTTCATGGATAACAT-TAGCATTGAAGGTAAAACAAACTTCTTTGA 23159 | || || ||||| || ||||| ||||| | || | | || || || ||||||||||| Sbjct 244153 CGAACCCCTTTGACTTTATGGAGAACATCTCGC-TCGGTGGCAAGACCAACTTCTTTGA 244096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356233270038628