Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03- 01] 76 sequences; 29,468,565 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq18 116 4e-21 seq5 86.0 6e-12 >seq18 Length=597235 Score = 116 bits (128), Expect = 4e-21 Identities = 356/539 (66%), Gaps = 21/539 (4%) Strand=Plus/Minus Query 52532 TCAACGCTTTTGACAATGTTCCGTGTGTGCGCAAAAAGGATGATTGGGCATTGAAATGGA 52591 ||||||| | |||| |||| || | ||| |||| || ||||| | || |||| Sbjct 244603 TCAACGCCATCGACACCATTCCCTGCATCCGCCGCAAGGCCGACTGGGCCCTCAAGTGGA 244544 Query 52592 TCGAAAACGACAAAGCCACTTTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTG 52651 | | || || | | || |||||| | || ||||| || ||||| || || || Sbjct 244543 TTGCCGACCACGAGTCGACCTTTGCCCAGCGCCTGGTGGCCTTTGCCGCCGTCGAGGGCA 244484 Query 52652 TGtttttttCGGGTAGTTTTGCGGCAATATTTTACAT-CAAAACCTTGGGCATAATGCCC 52710 | || || || || ||||| | || || | | | || | ||| | | |||||| Sbjct 244483 TCTTCTTCTCCGGCGCCTTTGCCTCCATTTTCTGGCTGCGCAAGCGTGGTC-TGATGCCC 244425 Query 52711 GGCCTCACGTTTAGCAACGAGTTGATATCGCGCGACGAAGGAATGCACACAGATTTTGCG 52770 ||||| || ||| ||||||| |||| ||||||||||| || ||||||| || ||||| Sbjct 244424 GGCCTGACCTTTTCCAACGAGCTGATTTCGCGCGACGAGGGCCTGCACACCGACTTTGCC 244365 Query 52771 TGTTTG-TATTATAATACGCGCGTTAAAGAAAAATTGTCATATGAAAAA----ATTCTAG 52825 || || | || | ||| | | ||| || | | | || || ||| | Sbjct 244364 TGCCTGCTCTTCT----CGCACCT----GAACAACCGCCCCAGCAAGAAGCTCATTGAGG 244313 Query 52826 ACATGTTTAAAGAGGCCGTCGACATTGAAAAAGAGTTTTTTACGGACGCTTTACCCGTAT 52885 | || | | || ||||||| |||||| || ||||| | || || || | ||| Sbjct 244312 AAATCATCACTGATGCCGTCGTCATTGAGAAGGAGTTCCTGACTGAGGCCCTGCCCTGCG 244253 Query 52886 CATTGTTGGGCATGAACG-CGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGA 52944 | || | |||||||||| ||||| | ||| ||||||| |||||||| || ||| | Sbjct 244252 CCCTGCTCGGCATGAACGCCGACC-TCATGAAGCAGTACATTGAGTTTGTCGCCGACCGT 244194 Query 52945 CTGTTGATGCAGCTCGGTCAGCCGAAATACTATAATGCGC--GTAACCCCTTTTCGTTTA 53002 ||| || || ||||| || ||||| | || || | ||||||||| |||| Sbjct 244193 CTGCTGGTGGCCCTCGG-CA-ACGAAAAGGTCTACCGCTCCACGAACCCCTTTGACTTTA 244136 Query 53003 TGAACAACATATCGCTCGAGGGCAAAACAAACTTTTTCGAGAGACGTGTGGGCGAGTAC 53061 || | ||||| ||||||| ||||| || ||||| || |||| ||||| ||||| ||| Sbjct 244135 TGGAGAACATCTCGCTCGGTGGCAAGACCAACTTCTTTGAGAAGCGTGTTGGCGACTAC 244077 >seq5 Length=956377 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| | ||||| |||||||| || |||||||| || || Sbjct 899633 CCACCACGAAGACGGAGAACCAGGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCCGAG 899692 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||| |||||||| || || || | || ||||| ||||| || ||||| Sbjct 899693 AGCGTGCGACCGTCCTCGAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGGTCCGGAGGG 899752 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTG-TGTCGGTGGGCTCCAC 139716 || || || ||||| ||| | || | || | | || || |||||| | |||||| Sbjct 899753 ATACCCTCCTTGTCC-TGAATCTTCGACTTCACATTGTCAATGGTGTCGGATGACTCCAC 899811 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||| | || | ||||||||||| | || || || || || |||||| Sbjct 899812 CTCCAGAGTAATGGTCTTGCCGGTAAGAGTCTTGACAAAGATCTGCATA 899860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496063528739200