Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03-
01] 76 sequences; 29,468,565 total letters
Query= NC_004117.1
Length=158482
Score E
Sequences producing significant alignments: (Bits) Value
seq18 120 3e-22
>seq18
Length=597235
Score = 120 bits (132), Expect = 3e-22
Identities = 249/362 (69%), Gaps = 13/362 (4%)
Strand=Plus/Minus
Query 50500 ATGCCCGGCCTCACGTTTAGCAACGAGTTGATTTCGCGCGACGAAGGAATGCACACAGAC 50559
||||||||||| || ||| ||||||| |||||||||||||||| || ||||||| |||
Sbjct 244430 ATGCCCGGCCTGACCTTTTCCAACGAGCTGATTTCGCGCGACGAGGGCCTGCACACCGAC 244371
Query 50560 TTTGCGTGTTTGTACTACAATACGCGCGTAAATGAAAAATTATCAT-ACGAAACA-ATTT 50617
||||| || || || | ||| | | || || || | ||| | |||
Sbjct 244370 TTTGCCTGCCTGCTCTTCT---CGCACCTGAAC--AACCGCCCCAGCAAGAAGCTCATTG 244316
Query 50618 TGGACATGTTCAAAGAAGCCGTCGACATCGAAAAAGAGTTTTTCACGGACGCTTTACCCG 50677
||| || ||| || ||||||| ||| || || ||||| | || || || | |||
Sbjct 244315 AGGAAATCATCACTGATGCCGTCGTCATTGAGAAGGAGTTCCTGACTGAGGCCCTGCCCT 244256
Query 50678 TGGCATTGTTGGGCATGAACGCAGACATGATGTGCGAGTACATTGAGTTTGTTGCAGACA 50737
|| || | ||||||||||| ||| | ||| |||||||||||||||| || |||
Sbjct 244255 GCGCCCTGCTCGGCATGAACGCCGACCTCATGAAGCAGTACATTGAGTTTGTCGCCGACC 244196
Query 50738 GATTGTTGTTGCAGCTGGGACAACCGAAATACTATA---ATGCACGTAACCCCTTTCCGT 50794
| || || || || || ||| ||||| | || | |||| ||||||||| |
Sbjct 244195 GTCTGCTGGTGGCCCTCGG-CAA-CGAAAAGGTCTACCGCTCCACG-AACCCCTTTGACT 244139
Query 50795 TTATGAATAACATATCGTTGGAGGGCAAAACAAACTTTTTCGAAAGACGTGTAGGCGAAT 50854
||||| | ||||| ||| | | ||||| || ||||| || || | ||||| ||||| |
Sbjct 244138 TTATGGAGAACATCTCGCTCGGTGGCAAGACCAACTTCTTTGAGAAGCGTGTTGGCGACT 244079
Query 50855 AC 50856
||
Sbjct 244078 AC 244077
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 507013918336320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |