Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03- 01] 76 sequences; 29,468,565 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq18 120 3e-22 >seq18 Length=597235 Score = 120 bits (132), Expect = 3e-22 Identities = 249/362 (69%), Gaps = 13/362 (4%) Strand=Plus/Minus Query 50500 ATGCCCGGCCTCACGTTTAGCAACGAGTTGATTTCGCGCGACGAAGGAATGCACACAGAC 50559 ||||||||||| || ||| ||||||| |||||||||||||||| || ||||||| ||| Sbjct 244430 ATGCCCGGCCTGACCTTTTCCAACGAGCTGATTTCGCGCGACGAGGGCCTGCACACCGAC 244371 Query 50560 TTTGCGTGTTTGTACTACAATACGCGCGTAAATGAAAAATTATCAT-ACGAAACA-ATTT 50617 ||||| || || || | ||| | | || || || | ||| | ||| Sbjct 244370 TTTGCCTGCCTGCTCTTCT---CGCACCTGAAC--AACCGCCCCAGCAAGAAGCTCATTG 244316 Query 50618 TGGACATGTTCAAAGAAGCCGTCGACATCGAAAAAGAGTTTTTCACGGACGCTTTACCCG 50677 ||| || ||| || ||||||| ||| || || ||||| | || || || | ||| Sbjct 244315 AGGAAATCATCACTGATGCCGTCGTCATTGAGAAGGAGTTCCTGACTGAGGCCCTGCCCT 244256 Query 50678 TGGCATTGTTGGGCATGAACGCAGACATGATGTGCGAGTACATTGAGTTTGTTGCAGACA 50737 || || | ||||||||||| ||| | ||| |||||||||||||||| || ||| Sbjct 244255 GCGCCCTGCTCGGCATGAACGCCGACCTCATGAAGCAGTACATTGAGTTTGTCGCCGACC 244196 Query 50738 GATTGTTGTTGCAGCTGGGACAACCGAAATACTATA---ATGCACGTAACCCCTTTCCGT 50794 | || || || || || ||| ||||| | || | |||| ||||||||| | Sbjct 244195 GTCTGCTGGTGGCCCTCGG-CAA-CGAAAAGGTCTACCGCTCCACG-AACCCCTTTGACT 244139 Query 50795 TTATGAATAACATATCGTTGGAGGGCAAAACAAACTTTTTCGAAAGACGTGTAGGCGAAT 50854 ||||| | ||||| ||| | | ||||| || ||||| || || | ||||| ||||| | Sbjct 244138 TTATGGAGAACATCTCGCTCGGTGGCAAGACCAACTTCTTTGAGAAGCGTGTTGGCGACT 244079 Query 50855 AC 50856 || Sbjct 244078 AC 244077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507013918336320