Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03- 01] 76 sequences; 29,468,565 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq18 239 7e-58 seq53 194 2e-44 >seq18 Length=597235 Score = 239 bits (264), Expect = 7e-58 Identities = 571/851 (67%), Gaps = 37/851 (4%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| | |||||||| ||||| |||| ||||| ||||||| ||| ||| | |||||| Sbjct 244919 ATCTGGCAGATGTACAAGAAGGCCGAGGCGTCCTTCTGGACGGCCGAGGAGATTGATCTG 244860 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGT---TTATA 125135 |||||||| || |||| ||| | | || ||| | | || | ||| | || Sbjct 244859 TCCAAGGATCTCCACGACTGGAACAACCGCATGA---ACAAGGACGAAAAGTACTTCATC 244803 Query 125136 TCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTG-TTGAC 125194 |||||| | | ||||||||||||| ||| ||||| || |||||||| || ||| |||| Sbjct 244802 TCGCACGTCCTCGCCTTCTTTGCCGCCTCAGATGGCATTGTCAACGAGAACCTGGTTGAG 244743 Query 125195 ACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCAT 125254 || ||||| ||| | || || |||| ||||| ||||| ||||| ||||| Sbjct 244742 -CGCTTCTCAGGCGAGGTCCAGATCCCTGAGGCCCGCTGCTTCTACGGCTTCCAGATCAT 244684 Query 125255 GATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC 125314 ||| |||||| | ||||| || | |||||| || || |||| |||||| || || Sbjct 244683 GATGGAGAACATCCACTCCGAGACGTACTCGCTGCTCATCGACACGTACATCAAGGAGCC 244624 Query 125315 G---CAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAA 125371 || || | || || || ||||| |||||||| | || | || || || Sbjct 244623 CGCCCAGCGCAGCTACCTGTTC---AACGCCATCGACACCATTCCCTGCATCCGCCGCAA 244567 Query 125372 GGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGT 125431 ||| | |||| | |||||| | ||| || |||| | | ||| | | ||||| Sbjct 244566 GGCCGACTGGGCCCTCAAGTGGATTGCCGACCACGAGTCGACCTTTGCCCAGCGCCTGGT 244507 Query 125432 GGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCT 125491 ||| || |||||||| |||||||||||||| || || ||||| |||| || ||||| Sbjct 244506 GGCCTTTGCCGCCGTCGAGGGCATCTTCTTCTCCGGCGCCTTTGCCTCCATTTTCTGGCT 244447 Query 125492 CAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGA 125551 ||||| || || |||||||| ||||| |||||| | || || || ||||| Sbjct 244446 GCGCAAGCGTGGTCTGATGCCCGGCCTGACCTTTTCCAACGAGCTGATTTCGCGCGACGA 244387 Query 125552 GGGCCTACACTGTGACTTTGCCATTCTACTGTT-TCGCAACT-ATCTGCGTCCCGAG--T 125607 |||||| ||| ||||||||| || || || ||||| || | | | ||| || Sbjct 244386 GGGCCTGCACACCGACTTTGCCTGCCTGCTCTTCTCGCACCTGAACAACCGCCCCAGCAA 244327 Query 125608 GCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAG 125667 | || | || || |||| ||||| || |||||||| || || | | Sbjct 244326 GAAGCT-CATTGAGGAAA---TCATC---------ACTGATGCCGTCGTCATTGAGAAGG 244280 Query 125668 AGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCG 125727 |||| || || || |||| || | | || | ||||||||| | | || ||| Sbjct 244279 AGTTCCTGACTGAGGCCCTGCCCTGCGCCCTGCTCGGCATGAACGCCGACCTCATGAAGC 244220 Query 125728 AGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC--CG-CAAGATTT 125784 ||||||| |||||||| || || ||||| ||| | | | ||| || ||| | | Sbjct 244219 AGTACATTGAGTTTGTCGCCGACCGTCTGCTG---GTGGCCCTCGGCAACGAAAAGGTCT 244163 Query 125785 ACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACT 125844 || | ||| ||| |||||||| || ||| | ||| || || | || |||||||||| Sbjct 244162 ACCGCTCCACGAACCCCTTTGACTTTATGGAGAACATCTCGCTCGGTGGCAAGACCAACT 244103 Query 125845 TTTTCGAGAAG 125855 | || |||||| Sbjct 244102 TCTTTGAGAAG 244092 >seq53 Length=159929 Score = 194 bits (214), Expect = 2e-44 Identities = 353/509 (69%), Gaps = 6/509 (1%) Strand=Plus/Minus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| ||||| || || || || || | ||| | ||| |||| || |||||||| || Sbjct 99139 CAGGGTGGCAACAAGCGCCCCGGTGCCTTTGCCATTTACCTGGAGCCGTGGCACGCCGAT 99080 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || ||||| || | || ||||||| ||| ||| ||||||| || ||| | || Sbjct 99079 GTGTTTGAGTTCCTTGACCTGCGCAAGAACCACGGCAAGGAAGAGGTTCGCGCCCGTGAT 99020 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCT-A 97054 | || || || ||| | || || ||||||||||||| ||| | || | ||| | Sbjct 99019 CTTTTCCTGGCTCTGTGGATCCCTGACCTGTTCATGAAGCGTGTCGA-GAAGAACGCTGA 98961 Query 97055 CTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTT 97114 ||||| || ||||||||| || || || || ||| |||| |||| ||||| ||||| Sbjct 98960 CTGGACTCTGATGTGCCCCAACGAGTGCCCTGGCCTGGCCGACTGCTACGGCGAGGAGTT 98901 Query 97115 TGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATA-CGTGAGACGAGTCGATGCAC 97173 |||||| |||| |||||||| |||||||| |||| ||| || | || | Sbjct 98900 TGAGGCGCTGTACGAAAAGTACGAGCAGGAGGGCCGCGGTCGTGCCTCGA-TCAAGGCCC 98842 Query 97174 GAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTC 97232 |||| |||||| | ||||| || ||| ||| |||||||| | |||| ||| || Sbjct 98841 -AGAAGCTGTGGTACGCCATTCTGGAGGCGCAGACCGAGACTGGCAACCCGTTCATGCTG 98783 Query 97233 TACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCC 97292 |||||||| | || ||||| |||||||| || ||||||||||| ||||| Sbjct 98782 TACAAGGACCACTGCAACCGCAAGAGCAACCAGAAGAACCTGGGCACCATCCGCAGCTCC 98723 Query 97293 AATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTCTG 97352 || ||||||||||| ||| | |||||| | ||||| ||| || || ||| ||| Sbjct 98722 AACCTGTGCACGGAGATTATCGAGTACTGTGCGCCGGATGAGGTTGCCGTGTGCAACCTG 98663 Query 97353 GCATCGGTCAATCTGCCCAAGTTTGTAGA 97381 || ||| | |||||| |||||| || Sbjct 98662 GCTTCGCTGGCTCTGCCGTCGTTTGTCGA 98634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741058495993760