Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03- 01] 76 sequences; 29,468,565 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq5 131 4e-25 >seq5 Length=956377 Score = 131 bits (144), Expect = 4e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || |||||||| || ||||| || || || | |||||| || || || || || Sbjct 899663 GTAGACTCCTTCTGAATGTTGTAGTCCGAGAGCGTGCGACCGTCCTCGAGCTGCTTGCCG 899722 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || ||||| || | ||| || || ||||| || || || || ||||||||||| | || Sbjct 899723 GCGAAAATGAGACGCTGCTGGTCCGGAGGGATACCCTCCTTGTCCTGAATCTTCGACTTC 899782 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| ||| | || ||||| || ||||| ||||| || ||||| || Sbjct 899783 ACATTGTCAATGGTGTCGGATGACTCCACCTCCAGAGTAATGGTCTTGCCGGTAAGAGTC 899842 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 899843 TTGACAAAGATCTGCAT 899859 Score = 122 bits (134), Expect = 2e-22 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| || || || | |||||| || || || || ||| Sbjct 899435 GTCGACTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGACCGTCCTCCAGCTGCTTACCA 899494 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | ||| || ||||| || || || || || ||||||||||| | || Sbjct 899495 GCAAAGATCAGACGCTGCTGGTCAGGGGGAATACCCTCCTTGTCCTGAATCTTGGACTTG 899554 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | |||||| | || ||||| || ||||| ||||| ||||| || || Sbjct 899555 ACGTTGTCAATGGTATCCGACGACTCAACCTCCAGCGTAATGGTCTTGCCAGTCAGCGTC 899614 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 899615 TTGACAAAGATCTGCAT 899631 Score = 107 bits (118), Expect = 4e-18 Identities = 131/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || |||||||| ||||| | ||||| || || || || ||| Sbjct 900176 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGGCCGTCCTCAAGCTGCTTGCCA 900235 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | ||| ||||| ||||| || || || || ||||||||||| | || Sbjct 900236 GCAAAGATCAGACGCTGCTGATCCGGAGGAATACCCTCCTTGTCCTGAATCTTGGACTTG 900295 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | || ||| || ||| ||||| || || || ||||| || || | ||| Sbjct 900296 ACGTTGTCGATAGTGTCGGAAGATTCCACCTCAAGGGTGATGGTCTTGCCCGTCACTGT 900354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151397278825808