Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03-
01] 76 sequences; 29,468,565 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq57 172 9e-39
seq3 111 2e-20
>seq57
Length=131118
Score = 172 bits (190), Expect = 9e-39
Identities = 201/269 (75%), Gaps = 2/269 (1%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
||| |||||||| |||| ||| |||||| || |||||||| || ||||||||||| ||||
Sbjct 21575 CGCCAAGCGTCACCGCAAGAT-TCTTCGCGACAACATCCAGGGTATCACCAAGCCCGCTA 21517
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550
|||| ||||| |||||||||||||| ||||||||| |||| | || |||| || ||||
Sbjct 21516 TCCGCCGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATCTCCGCCATGATCTACGAGGAGA 21457
Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610
|| | |||| | ||| |||||| || || |||| ||| || || ||| || |
Sbjct 21456 CCCGCGGTGTTCTCAAGTCGTTCCTCGAGGGTGTCATCCGTGACGCCGTCACCTACACTG 21397
Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670
||||||| || || ||||| |||||||| | || | ||||| || | || | ||||
Sbjct 21396 AGCACGCCAAGCGCAAGACCGTCACCTCGCTCGACGTTGTCTACGCTCTCAAGAGACAAG 21337
Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAA 16699
|||| | | || ||||| || |||||
Sbjct 21336 GCCGCACCCTGTACGGTTTCGGTGGTTAA 21308
>seq3
Length=1108403
Score = 111 bits (122), Expect = 2e-20
Identities = 86/100 (86%), Gaps = 2/100 (2%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
||| |||||||| |||| ||| |||||| || ||||| || || ||||||||||| || |
Sbjct 756592 CGCCAAGCGTCACCGCAAGAT-TCTTCGCGACAACATTCAGGGTATCACCAAGCCCGCCA 756534
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530
|||||||||||||||| |||||||| ||||||||| ||||
Sbjct 756533 TCCGTCGTCTGGCTCGCCGTGGTGGTGTCAAGCGTATCTC 756494
Score = 95.1 bits (104), Expect = 2e-15
Identities = 124/172 (72%), Gaps = 0/172 (0%)
Strand=Plus/Minus
Query 16528 CTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTAT 16587
|||| | || |||| || |||| ||||| ||| ||||| |||||| || ||| ||
Sbjct 756440 CTCTCTAGTGATCTACGAGGAGACTCGTGGTGTGCTGAAGTCCTTCCTGGAGGGCGTCAT 756381
Query 16588 CCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATAT 16647
|| ||||| || ||| ||||||||||| || |||||||| |||||||| | || |
Sbjct 756380 CCGCGATGCCGTCACCTACACCGAGCACGCCAAGCGTAAGACCGTCACCTCGCTCGACGT 756321
Query 16648 CGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699
||||| || |||| || || ||||| | | || ||||| || |||||
Sbjct 756320 TGTCTACGCTCTGAAGCGCCAGGGCCGCACCCTGTACGGTTTCGGTGGTTAA 756269
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79075130512668
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |