Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03- 01] 76 sequences; 29,468,565 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq57 172 9e-39 seq3 111 2e-20 >seq57 Length=131118 Score = 172 bits (190), Expect = 9e-39 Identities = 201/269 (75%), Gaps = 2/269 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| ||| |||||| || |||||||| || ||||||||||| |||| Sbjct 21575 CGCCAAGCGTCACCGCAAGAT-TCTTCGCGACAACATCCAGGGTATCACCAAGCCCGCTA 21517 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| ||||| |||||||||||||| ||||||||| |||| | || |||| || |||| Sbjct 21516 TCCGCCGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATCTCCGCCATGATCTACGAGGAGA 21457 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | |||| | ||| |||||| || || |||| ||| || || ||| || | Sbjct 21456 CCCGCGGTGTTCTCAAGTCGTTCCTCGAGGGTGTCATCCGTGACGCCGTCACCTACACTG 21397 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| |||||||| | || | ||||| || | || | |||| Sbjct 21396 AGCACGCCAAGCGCAAGACCGTCACCTCGCTCGACGTTGTCTACGCTCTCAAGAGACAAG 21337 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | | || ||||| || ||||| Sbjct 21336 GCCGCACCCTGTACGGTTTCGGTGGTTAA 21308 >seq3 Length=1108403 Score = 111 bits (122), Expect = 2e-20 Identities = 86/100 (86%), Gaps = 2/100 (2%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| ||| |||||| || ||||| || || ||||||||||| || | Sbjct 756592 CGCCAAGCGTCACCGCAAGAT-TCTTCGCGACAACATTCAGGGTATCACCAAGCCCGCCA 756534 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 |||||||||||||||| |||||||| ||||||||| |||| Sbjct 756533 TCCGTCGTCTGGCTCGCCGTGGTGGTGTCAAGCGTATCTC 756494 Score = 95.1 bits (104), Expect = 2e-15 Identities = 124/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 16528 CTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTAT 16587 |||| | || |||| || |||| ||||| ||| ||||| |||||| || ||| || Sbjct 756440 CTCTCTAGTGATCTACGAGGAGACTCGTGGTGTGCTGAAGTCCTTCCTGGAGGGCGTCAT 756381 Query 16588 CCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATAT 16647 || ||||| || ||| ||||||||||| || |||||||| |||||||| | || | Sbjct 756380 CCGCGATGCCGTCACCTACACCGAGCACGCCAAGCGTAAGACCGTCACCTCGCTCGACGT 756321 Query 16648 CGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||||| || |||| || || ||||| | | || ||||| || ||||| Sbjct 756320 TGTCTACGCTCTGAAGCGCCAGGGCCGCACCCTGTACGGTTTCGGTGGTTAA 756269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075130512668