Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03-
01] 76 sequences; 29,468,565 total letters
Query= NC_007921.1
Length=147544
Score E
Sequences producing significant alignments: (Bits) Value
seq18 156 4e-33
seq5 122 8e-23
seq27 114 1e-20
seq15 109 5e-19
>seq18
Length=597235
Score = 156 bits (172), Expect = 4e-33
Identities = 338/495 (68%), Gaps = 13/495 (3%)
Strand=Plus/Minus
Query 46106 CCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGCGACTTTCGCCGAGCGTATGGTGG 46165
|||||||||| | |||||||| | | | |||| || ||| |||| ||||||
Sbjct 244564 CCGACTGGGCCCTCAAGTGGATTGCCGACCACGAGTCGACCTTTGCCCAGCGCCTGGTGG 244505
Query 46166 CCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTTGCCGCCATCTTTTACAT-C 46224
||||||| || |||||| |||| || || ||| |||||| |||| || | | |
Sbjct 244504 CCTTTGCCGCCGTCGAGGGCATCTTCTTCTCCGGCGCCTTTGCCTCCATTTTCTGGCTGC 244445
Query 46225 AAAACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGAGCTGATATCGCGCGACGAG 46284
|| | || | | |||||||||||||| ||| |||||||||||| ||||||||||||
Sbjct 244444 GCAAGCGTGGTC-TGATGCCCGGCCTGACCTTTTCCAACGAGCTGATTTCGCGCGACGAG 244386
Query 46285 GGCCTGCATACGGACTTTGCGTGTCTCTACTATAACACTCGCGTGCACGACAAGCTTGCG 46344
|||||||| || |||||||| || || || | | | | || || || || |
Sbjct 244385 GGCCTGCACACCGACTTTGCCTGCCTGCTCT---TCTCGCACCTGAACAAC-CGCCCCAG 244330
Query 46345 CCCGA--CACCGTGCTGAGCATGTTCAAGGAGGCGGTGGCCATTGAGAAGGAGTTTTTTA 46402
| || | | || || || ||| || || || | ||||||||||||||| | |
Sbjct 244329 CAAGAAGCTCATTGAGGA-AATCATCACTGATGCCGTCGTCATTGAGAAGGAGTTCCTGA 244271
Query 46403 CGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAACGCACAGTCAATGTGCGACTACATCG 46462
| | || |||||| |||||||| ||||||||||| | ||| | ||||| |
Sbjct 244270 CTGAGGCCCTGCCCTGCGCCCTGCTCGGCATGAACGCCGACCTCATGAAGCAGTACATTG 244211
Query 46463 AGTTTGTAGCGGACCGACTGCTCGTGCAGCTTCACCAGCCGAAGCATTTTCACGCGC--G 46520
||||||| || ||||| ||||| ||| | || || |||| | | ||| |
Sbjct 244210 AGTTTGTCGCCGACCGTCTGCTGGTG-GCCCTCGGCA-ACGAAAAGGTCTACCGCTCCAC 244153
Query 46521 CAATCCATTTGAGTTTATGAACAACATCTCCCTGGAGGGCAAAACTAATTTTTTCGAAAA 46580
|| || ||||| |||||| | |||||||| || | ||||| || || || || || ||
Sbjct 244152 GAACCCCTTTGACTTTATGGAGAACATCTCGCTCGGTGGCAAGACCAACTTCTTTGAGAA 244093
Query 46581 GCGCGTCGGCGAGTA 46595
||| || ||||| ||
Sbjct 244092 GCGTGTTGGCGACTA 244078
>seq5
Length=956377
Score = 122 bits (134), Expect = 8e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| || | ||| || || | || | || |||||||| ||||||||||| ||
Sbjct 899633 CCACCACGAAGACGGAGAACCAGGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCCGAG 899692
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| ||||| |||||| ||||||||||| ||| | || | |||||||||||||||||||
Sbjct 899693 AGCGTGCGACCGTCCTCGAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGGTCCGGAGGG 899752
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || || ||||| || ||| ||| | | || | || |||| ||||| |
Sbjct 899753 ATACCCTCCTTGTCCTGAATCTTCGACTTCACATTGTCAATGGTGTCGGATGACTCCACC 899812
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | |||| ||| || ||||| ||||| || || || ||||||||
Sbjct 899813 TCCAGAGTAATGGTCTTGCCGGTAAGAGTCTTGACAAAGATCTGCAT 899859
Score = 116 bits (128), Expect = 3e-21
Identities = 156/217 (72%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| || | ||| ||||| | || | ||| |||||||| || |||||||| || |
Sbjct 899861 CCACCACGGAGACGAAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 899920
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| ||||| |||||| ||||||||||| || |||| | |||||||| ||||||||
Sbjct 899921 AGAGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGATCCGGAGGA 899980
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || || ||||| ||| || ||||| | || | ||||| | |||||||
Sbjct 899981 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTATCCGACGACTCGACT 900040
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224
|||| ||| | ||| || ||||| || || || ||||
Sbjct 900041 TCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGA 900077
Score = 114 bits (126), Expect = 1e-20
Identities = 162/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066
|||||| |||| |||||| || || || | ||||||||||| || |||||||| |||
Sbjct 899404 GCCACCACGCAGACGCAGAACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGA 899463
Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126
| ||||| |||||| |||||||| || || |||| | |||||||||||| || ||
Sbjct 899464 GAGCGTGCGACCGTCCTCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCAGGGGG 899523
Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186
|| || || ||||| || || ||||| | || | ||||| | ||||| |
Sbjct 899524 AATACCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATGGTATCCGACGACTCAAC 899583
Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | |||| ||| || || || || || || || || ||||||||
Sbjct 899584 CTCCAGCGTAATGGTCTTGCCAGTCAGCGTCTTGACAAAGATCTGCAT 899631
Score = 102 bits (112), Expect = 8e-17
Identities = 103/134 (77%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| |||| |||||| || | || | ||| |||||||| || |||||||| || |
Sbjct 900146 CCACCACGCAGACGCAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 900205
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| ||||| |||||| ||||||||||| || |||| | ||||||||| ||||||||
Sbjct 900206 AGAGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCCGGAGGA 900265
Query 131128 ATTCCTTCTTTGTC 131141
|| || || |||||
Sbjct 900266 ATACCCTCCTTGTC 900279
>seq27
Length=468876
Score = 114 bits (126), Expect = 1e-20
Identities = 138/188 (73%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104
|||| ||||||||||| ||| || |||||| ||||| ||||||||||| ||| |||
Sbjct 115674 CCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGA 115733
Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164
| | |||||||||||||| || || || || ||||| ||| || ||||| | |
Sbjct 115734 TCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGT 115793
Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224
| | || || | |||||||| || | ||||| ||| ||||| || || || || ||||
Sbjct 115794 CGATCGTGTCCGAGGACTCGACCTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGA 115853
Query 131225 AAATCTGC 131232
|| | |||
Sbjct 115854 AACTGTGC 115861
>seq15
Length=634592
Score = 109 bits (120), Expect = 5e-19
Identities = 138/190 (73%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104
|||| || |||||||| ||| || ||||| ||||| ||||||||||| ||| |||
Sbjct 108844 CCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGA 108785
Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164
| | |||||||| ||||| || || || || ||||| ||| || ||||| | |
Sbjct 108784 TCAGGCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 108725
Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224
| | || || | |||||| | |||| ||||| || ||||| || || || || ||||
Sbjct 108724 CGATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTCAGGGTCTTGACGA 108665
Query 131225 AAATCTGCAT 131234
||||||||||
Sbjct 108664 AAATCTGCAT 108655
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 472012351587840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |