Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03- 01] 76 sequences; 29,468,565 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq9 107 1e-18 >seq9 Length=878609 Score = 107 bits (118), Expect = 1e-18 Identities = 198/288 (69%), Gaps = 2/288 (1%) Strand=Plus/Minus Query 6200 GTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTAT 6259 ||||||||| ||||| ||||| ||| | ||||| |||| || ||||| |||||||| Sbjct 510615 GTTCTACCGGTACAAGATGCCCCGCCTTCAGACCAAGATCGAAGGCAAGGGTAACGGTAT 510556 Query 6260 TAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTA 6319 || || ||| | |||||| || | | ||||| || |||| | || |||| | | Sbjct 510555 CAAGACTGTCGTCGTCAACCTGTCGGCCGTCGCCCAGTCGCTGGCCCGTCCTGGTGCTCA 510496 Query 6320 CCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGA 6379 || || || || || || | || || || || ||||| | |||| | | |||| Sbjct 510495 CCTGATCAAGTACTTTGGATTTGAGCTGGGTGCCCAGACCAACATTGACCCCGCCGACGA 510436 Query 6380 GCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTAC-TTGACGGCT 6438 |||| ||| | || || ||||| | | ||||||||||| | || | |||||| Sbjct 510435 CCGCTGGATCATCAATGGCTCGCACGATACCAAGAAGCTGCAGGA-TCACGTCTACGGCT 510377 Query 6439 TTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCG 6486 | ||| ||||||||| ||||| | | ||| | ||||| ||||||| Sbjct 510376 TCATTGTCAAGTTTGTTCTGTGCAAGAAGTGCAAGAACCCCGAGACCG 510329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334946889755156