Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03- 01] 76 sequences; 29,468,565 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq5 120 3e-22 seq15 111 1e-19 seq27 87.8 2e-12 >seq5 Length=956377 Score = 120 bits (132), Expect = 3e-22 Identities = 164/228 (72%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || || || |||| ||||| |||||| | |||| || | ||| | |||| Sbjct 900348 ACGGGCAAGACCATCACCCTTGAGGTGGAATCTTCCGACACTATCGACAACGTCAAGTCC 900289 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || ||||| ||||||||||||||||| || ||||| || ||||| || ||||| ||||| Sbjct 900288 AAGATTCAGGACAAGGAGGGTATTCCTCCGGATCAGCAGCGTCTGATCTTTGCTGGCAAG 900229 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | ||||| |||||| | || || |||||||| || || || |||||| | || Sbjct 900228 CAGCTTGAGGACGGCCGCACTCTGTCTGACTACAACATCCAGAAGGAGTCCACCCTCCAC 900169 Query 22423 TTAGTTTTGCGATTGCGCGGAGGTTTTC-CATTTTAAAATTATATTAT 22469 | || |||| |||| || ||| | | |||| || ||| ||||| Sbjct 900168 CTCGTCCTGCGTCTGCGTGGTGGTATGCAGATTTGTAAGTTACATTAT 900121 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || ||| | ||||| || || | ||||| || ||||| | || Sbjct 899859 ATGCAGATCTTTGTCAAGACTCTTACCGGCAAGACCATTACTCTGGAGGTGGAGTCATCC 899800 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || | || || ||||| |||||||||||||| || || || || Sbjct 899799 GACACCATTGACAATGTGAAGTCGAAGATTCAGGACAAGGAGGGTATCCCTCCGGACCAG 899740 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || |||||||| ||| | ||||| ||||| |||| || |||||| Sbjct 899739 CAGCGTCTCATTTTCGCCGGCAAGCAGCTCGAGGACGGTCGCACGCTCTCGGACTACAAC 899680 Query 22399 ATTCAAAAAGAATCCAC 22415 ||||| || || || || Sbjct 899679 ATTCAGAAGGAGTCTAC 899663 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | || || || || | || || || || || | | Sbjct 899631 ATGCAGATCTTTGTCAAGACGCTGACTGGCAAGACCATTACGCTGGAGGTTGAGTCGTCG 899572 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| | |||| || ||||| ||||||||||||||||| || || || Sbjct 899571 GATACCATTGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCCCCTGACCAG 899512 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||| || || ||| | ||||| ||||| ||||||| |||||| Sbjct 899511 CAGCGTCTGATCTTTGCTGGTAAGCAGCTGGAGGACGGTCGCACGCTCTCCGACTACAAC 899452 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || || || | || || ||| |||| |||| || || Sbjct 899451 ATCCAGAAGGAGTCGACTCTGCACTTGGTTCTGCGTCTGCGTGGTGG 899405 Score = 98.7 bits (108), Expect = 8e-16 Identities = 126/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 ||||| || || |||| || ||||| || | | |||||| | ||| | |||| Sbjct 900063 ACCGGCAAGACCATCACCCTCGAAGTCGAGTCGTCGGATACCATCGACAACGTCAAGTCC 900004 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || ||||||||||| ||||| || ||||| || || || || ||||| ||||| Sbjct 900003 AAGATCCAGGACAAGGAGGGCATTCCTCCGGATCAGCAGCGCCTGATCTTTGCTGGCAAG 899944 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACC 22416 ||| | ||||| |||||| | || || |||||||| || || || |||||| Sbjct 899943 CAGCTTGAGGACGGCCGCACTCTGTCTGACTACAACATCCAGAAGGAGTCCACC 899890 >seq15 Length=634592 Score = 111 bits (122), Expect = 1e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272 || |||||||| ||||| || || || | || ||||| ||| | || || || || || Sbjct 108649 GTCAAGATGCAGATTTTCGTCAAGACCCTGACGGGTAAGACGATTACCCTCGAGGTTGAG 108708 Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332 || | || ||| | ||| || |||| || || || ||||||||||| ||||| || Sbjct 108709 TCCTCGGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCG 108768 Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392 ||||| || || || || || || ||||| ||| | |||||| |||||| | ||||| Sbjct 108769 GATCAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCCGAC 108828 Query 22393 TACAACATTCAAAA 22406 |||||||| || || Sbjct 108829 TACAACATCCAGAA 108842 >seq27 Length=468876 Score = 87.8 bits (96), Expect = 2e-12 Identities = 131/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 22221 GCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGA 22280 ||| | ||| || || || | || ||||| || | || || || || || || | || Sbjct 115861 GCACAGTTTCGTCAAGACCCTGACGGGTAAGACCATTACCCTGGAGGTCGAGTCCTCGGA 115802 Query 22281 TACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACA 22340 || | ||| | |||| || || || ||||||||||| ||||| || || || || Sbjct 115801 CACGATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCA 115742 Query 22341 ACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACAT 22400 || || || || || ||||| ||| | |||||| ||||||| | ||||| |||||||| Sbjct 115741 GCGCCTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTGTCCGACTACAACAT 115682 Query 22401 TCAAAA 22406 ||| || Sbjct 115681 TCAGAA 115676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727611226940