Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03-
01] 76 sequences; 29,468,565 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq5 120 3e-22
seq15 111 1e-19
seq27 87.8 2e-12
>seq5
Length=956377
Score = 120 bits (132), Expect = 3e-22
Identities = 164/228 (72%), Gaps = 1/228 (0%)
Strand=Plus/Minus
Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302
|| || || || |||| ||||| |||||| | |||| || | ||| | ||||
Sbjct 900348 ACGGGCAAGACCATCACCCTTGAGGTGGAATCTTCCGACACTATCGACAACGTCAAGTCC 900289
Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362
|| ||||| ||||||||||||||||| || ||||| || ||||| || ||||| |||||
Sbjct 900288 AAGATTCAGGACAAGGAGGGTATTCCTCCGGATCAGCAGCGTCTGATCTTTGCTGGCAAG 900229
Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422
||| | ||||| |||||| | || || |||||||| || || || |||||| | ||
Sbjct 900228 CAGCTTGAGGACGGCCGCACTCTGTCTGACTACAACATCCAGAAGGAGTCCACCCTCCAC 900169
Query 22423 TTAGTTTTGCGATTGCGCGGAGGTTTTC-CATTTTAAAATTATATTAT 22469
| || |||| |||| || ||| | | |||| || ||| |||||
Sbjct 900168 CTCGTCCTGCGTCTGCGTGGTGGTATGCAGATTTGTAAGTTACATTAT 900121
Score = 116 bits (128), Expect = 3e-21
Identities = 144/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || ||||| || ||| | ||||| || || | ||||| || ||||| | ||
Sbjct 899859 ATGCAGATCTTTGTCAAGACTCTTACCGGCAAGACCATTACTCTGGAGGTGGAGTCATCC 899800
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | ||| || | || || ||||| |||||||||||||| || || || ||
Sbjct 899799 GACACCATTGACAATGTGAAGTCGAAGATTCAGGACAAGGAGGGTATCCCTCCGGACCAG 899740
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| ||||| || || |||||||| ||| | ||||| ||||| |||| || ||||||
Sbjct 899739 CAGCGTCTCATTTTCGCCGGCAAGCAGCTCGAGGACGGTCGCACGCTCTCGGACTACAAC 899680
Query 22399 ATTCAAAAAGAATCCAC 22415
||||| || || || ||
Sbjct 899679 ATTCAGAAGGAGTCTAC 899663
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || ||||| || || | || || || || | || || || || || | |
Sbjct 899631 ATGCAGATCTTTGTCAAGACGCTGACTGGCAAGACCATTACGCTGGAGGTTGAGTCGTCG 899572
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|||||| | ||| | |||| || ||||| ||||||||||||||||| || || ||
Sbjct 899571 GATACCATTGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCCCCTGACCAG 899512
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| ||||| || ||||| || || ||| | ||||| ||||| ||||||| ||||||
Sbjct 899511 CAGCGTCTGATCTTTGCTGGTAAGCAGCTGGAGGACGGTCGCACGCTCTCCGACTACAAC 899452
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445
|| || || || || || | || || ||| |||| |||| || ||
Sbjct 899451 ATCCAGAAGGAGTCGACTCTGCACTTGGTTCTGCGTCTGCGTGGTGG 899405
Score = 98.7 bits (108), Expect = 8e-16
Identities = 126/174 (72%), Gaps = 0/174 (0%)
Strand=Plus/Minus
Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302
||||| || || |||| || ||||| || | | |||||| | ||| | ||||
Sbjct 900063 ACCGGCAAGACCATCACCCTCGAAGTCGAGTCGTCGGATACCATCGACAACGTCAAGTCC 900004
Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362
|| || || ||||||||||| ||||| || ||||| || || || || ||||| |||||
Sbjct 900003 AAGATCCAGGACAAGGAGGGCATTCCTCCGGATCAGCAGCGCCTGATCTTTGCTGGCAAG 899944
Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACC 22416
||| | ||||| |||||| | || || |||||||| || || || ||||||
Sbjct 899943 CAGCTTGAGGACGGCCGCACTCTGTCTGACTACAACATCCAGAAGGAGTCCACC 899890
>seq15
Length=634592
Score = 111 bits (122), Expect = 1e-19
Identities = 141/194 (73%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272
|| |||||||| ||||| || || || | || ||||| ||| | || || || || ||
Sbjct 108649 GTCAAGATGCAGATTTTCGTCAAGACCCTGACGGGTAAGACGATTACCCTCGAGGTTGAG 108708
Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332
|| | || ||| | ||| || |||| || || || ||||||||||| ||||| ||
Sbjct 108709 TCCTCGGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCG 108768
Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392
||||| || || || || || || ||||| ||| | |||||| |||||| | |||||
Sbjct 108769 GATCAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCCGAC 108828
Query 22393 TACAACATTCAAAA 22406
|||||||| || ||
Sbjct 108829 TACAACATCCAGAA 108842
>seq27
Length=468876
Score = 87.8 bits (96), Expect = 2e-12
Identities = 131/186 (70%), Gaps = 0/186 (0%)
Strand=Plus/Minus
Query 22221 GCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGA 22280
||| | ||| || || || | || ||||| || | || || || || || || | ||
Sbjct 115861 GCACAGTTTCGTCAAGACCCTGACGGGTAAGACCATTACCCTGGAGGTCGAGTCCTCGGA 115802
Query 22281 TACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACA 22340
|| | ||| | |||| || || || ||||||||||| ||||| || || || ||
Sbjct 115801 CACGATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCA 115742
Query 22341 ACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACAT 22400
|| || || || || ||||| ||| | |||||| ||||||| | ||||| ||||||||
Sbjct 115741 GCGCCTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTGTCCGACTACAACAT 115682
Query 22401 TCAAAA 22406
||| ||
Sbjct 115681 TCAGAA 115676
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419727611226940
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |