Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03- 01] 76 sequences; 29,468,565 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq57 109 1e-18 seq53 105 1e-17 seq43 95.1 2e-14 >seq57 Length=131118 Score = 109 bits (120), Expect = 1e-18 Identities = 159/222 (72%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 || ||||| ||||| |||| |||||||| || || |||| ||||||||||| ||| Sbjct 85892 GGCGAGGACCTGTGCAACTGCACCTTCTCGCTGGCCTACGGTGCCAAGATTCTGCTTAAC 85833 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 |||| || | | ||||||||| | || || ||||| ||||||||| || || Sbjct 85832 CAGACCCATCTGCGCCTGAAGCGTGGCCAGCGCTACGGTCTGTGCGGTCCCAACGGTTCG 85773 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || ||| ||||| ||||| ||||| |||| ||| | | ||| ||||| | ||| Sbjct 85772 GGCAAGTCGACTCTGATGCGTGCCATCAACAACGAGCAGGTCG-AGGGTTTCCCCAAGCA 85714 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTC 279565 |||||||| | ||| || | || ||||||||| | ||||| Sbjct 85713 GTCTGAGGTTAAGACCGTCTTCGTCGAGCACGACCTGGACTC 85672 Score = 95.1 bits (104), Expect = 2e-14 Identities = 165/236 (70%), Gaps = 12/236 (5%) Strand=Plus/Minus Query 280161 TCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTG 280220 || || |||| |||||||| ||||| ||||| || ||||| || || ||||| |||||| Sbjct 85076 TCGCGTATTGCCGTCATTGGTCCCAACGGTGCTGGCAAGTCGACTCTGATCAACGTCCTG 85017 Query 280221 ACTGGCGAG-----ACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGA 280275 ||||| ||| |||| |||||| | | ||| |||| ||||| || | Sbjct 85016 ACTGGTGAGCTGATTCCCA--CCACTGGTGAG---ATTTACCAGCACGAGAACATCCGTA 84962 Query 280276 TGGCTTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTA 280335 | || ||| | |||||||||||| |||||| || |||||||||||| ||| || Sbjct 84961 TTGCCTACATTAAGCAGCACGCTTTCGCCCACATTGATAACCACCTGGACTCGACCCCCT 84902 Query 280336 ACCAATACATTCAGTGGCGCTATGCA-AGTGGGCAGGATCTGGAGTCGGTGGATCG 280390 | ||||| |||||||| | | || | ||| |||||| ||| | |||| || Sbjct 84901 CGGAGTACATCCAGTGGCG-TTTCCAGACTGGTGAGGATCGCGAGACCATGGACCG 84847 Score = 84.2 bits (92), Expect = 4e-11 Identities = 121/168 (72%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 280672 CCAAGCTGGGTCTGGACCCCGAGTTTACAACTCACTCTCGCATTCGCGGTCTTTCTGGAG 280731 |||| | |||||||| ||||| | ||||||| ||||| ||||| || || | Sbjct 84520 CCAACTTTGGTCTGGATGCCGAGCTGGTTTCTCACTCGCGCATGAAGGGTCTGTCGGGTG 84461 Query 280732 GCCAGAAGGTCAAACTTGTCATCGGAGCA-GCTCTGTGGCAACACCCTCACGTGATCGTT 280790 | ||| ||||| |||| | | || |||| |||||| | |||||| |||| ||| Sbjct 84460 GTCAGCGTGTCAAGGTTGTGCTGGCTGCCTGCTC-GTGGCAGCGTCCTCACCTGATTGTT 84402 Query 280791 CTCGACGAGCCTACCAACTATCTGGACCGCGAGAGCCTGGGCGCTCTG 280838 || || |||||||||||||| |||||||| || ||||| |||||| Sbjct 84401 CTTGATGAGCCTACCAACTACCTGGACCGTGACTCTCTGGGTGCTCTG 84354 >seq53 Length=159929 Score = 105 bits (116), Expect = 1e-17 Identities = 409/637 (64%), Gaps = 7/637 (1%) Strand=Plus/Plus Query 293173 GAGATCTCCCACGATGTCTTGTACACTGCCTTGACATCAGGATGAATGCCAATAACCTTC 293232 || ||||||||| |||||||||| ||||| ||| | |||| || ||| Sbjct 97938 GAAATCTCCCACACCGTCTTGTACAGCATCTTGATGTCATCGGGGATGCTGGGAATGTTC 97997 Query 293233 TGGATAGACCCTCCGTTGGCAATAATCTGGTTCTTCATTGTCTCGGACCA-AGTCCCACG 293291 ||||| ||||| | ||||| || |||||||||| | || ||||| || |||| | Sbjct 97998 TGGATCGACCCGTTCTCCGCAATGATGCGGTTCTTCATGTTATCCGACCACAGACCCAGG 98057 Query 293292 AGCAATGAGCTCGCGGACAAGGTAAGAGTTGACAACGGGGAACTCACCAGCGAGAGTGCG 293351 || || ||||| | || | | ||||||||| ||||||| ||||| || || Sbjct 98058 TCCACCAAG-TCGCGCAGCAGCCACGGGTTGACAACCTGGAACTCGCCAGCCAGCACACG 98116 Query 293352 ACGGCTGTAAATGTTCGAAGTGATGGGTTCGGCTGCCTCAACAGACCCGCAAATCTGAGC 293411 || ||||||||| ||||| || ||| ||| || |||||| | Sbjct 98117 GCGCTGGTAAATGTTGGAAGTATACGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGCGA 98176 Query 293412 AGTAGATGCGGTAGGCATAAGAGCAGTCGTCAGAGAGTTCCTCACACC---CTTCTTGAC 293468 || || || ||||| | ||| | ||| ||||| | |||||| || ||||| Sbjct 98177 CGTGCTGGCCGTCGGCATCGGCGCAAGCAGCAGCGAGTTGCGCACACCATGCTGCTTGAT 98236 Query 293469 ACGCGATTCGAGACCCGCCCAGTCC-AGAGCAGTCTGAGGTGTAACACCCCAGAGATGAT 293527 || | ||| ||||||||| |||| ||| || || || ||| | | | Sbjct 98237 CTGCTCCTTGAGCGATGCCCAGTCCCAGAGGTCGCTG-GGCGTGACGTTCCACATGTCAA 98295 Query 293528 ACTGCATGATACCCTTGCTGGCAGGAGACCCCTCAAAGGTGGGATGGGGGCCATGCTCAT 293587 |||||| || |||| | |||| || ||||| | || | | | || | ||| | Sbjct 98296 ACTGCAGAATGCCCTGGGAAACAGGCGAGCCCTCGTACGTAGAGTACGTTCCCTCCTCCT 98355 Query 293588 CAGAGAGCTCGCAAGATGCCTCAACAGCAGCAAAGTAAATGTGCTCGAAGATCTCACGGT 293647 | | ||| || ||| | |||||| ||| ||| ||| ||||| | || Sbjct 98356 GCGCAATCTCCATCGACGCCGTCAGAGCAGCGTGGTAGATGGTCTCAAAGATTTGCGTGT 98415 Query 293648 TGAGCTTGCGAGCCTGCTCAGAGTCAAACGGCATCTTCAGCTGGAAGAACACATCCTGCA 293707 ||||||||||||||| | || ||||| ||||| ||| ||||| ||||| || Sbjct 98416 TGAGCTTGCGAGCCTCGGCCGACTCAAAAGGCATGCGAAGCGCCAAGAAGGCATCCGCCA 98475 Query 293708 GACCCTGTACACCTACACCAACGGGGCGACGACGCTTGTTGCTCGTCTCTGCCTCGGGAA 293767 | ||||| ||||| ||||||| ||||| | ||| ||||||| ||| |||||||| | Sbjct 98476 GGCCCTGGACACCAACACCAATAGGGCGGTGGCGCATGTTGCTGTTCTGCGCCTCGGGCA 98535 Query 293768 CCGCATATGCCATCACATCAATGCTCCTGTCCAGGTT 293804 | | || | || |||||| | | || |||||| Sbjct 98536 CGGGGTAGTGGTTGACGTCAATGATGCGGTTCAGGTT 98572 >seq43 Length=230149 Score = 95.1 bits (104), Expect = 2e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 279692 GCCAGTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCT 279751 ||| || || || ||||||||||| ||||||||||||||||| || | || ||||| || Sbjct 214769 GCCCGTCGGATCGCTGTCGGGTGGATGGAAGATGAAGCTGGCGCTGGCGCGTGCCATGCT 214710 Query 279752 ACTGCGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGT 279811 | ||||| || || ||||| || ||||| || |||||| |||| ||||||| Sbjct 214709 GCAAAAGGCCGACGTGCTGCTGCTGGACGAGCCGACTAACCACCTGGATGTTGCCAACGT 214650 Query 279812 AGCCTGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCA 279871 ||||| | |||||| | | | | | || | || |||||||| ||||| Sbjct 214649 CAAGTGGCTCGAAAACTACCTCAAGACGCACCCGGACATTACGTCGCTCATTGTGTCTCA 214590 Query 279872 CGACTCTGGCTTCCTAGATG 279891 |||| |||||||| |||| Sbjct 214589 CGACAGCGGCTTCCTCGATG 214570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027835799143916