Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03-
01] 76 sequences; 29,468,565 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq57 109 1e-18
seq53 105 1e-17
seq43 95.1 2e-14
>seq57
Length=131118
Score = 109 bits (120), Expect = 1e-18
Identities = 159/222 (72%), Gaps = 2/222 (1%)
Strand=Plus/Minus
Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404
|| ||||| ||||| |||| |||||||| || || |||| ||||||||||| |||
Sbjct 85892 GGCGAGGACCTGTGCAACTGCACCTTCTCGCTGGCCTACGGTGCCAAGATTCTGCTTAAC 85833
Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464
|||| || | | ||||||||| | || || ||||| ||||||||| || ||
Sbjct 85832 CAGACCCATCTGCGCCTGAAGCGTGGCCAGCGCTACGGTCTGTGCGGTCCCAACGGTTCG 85773
Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524
|| ||| ||||| ||||| ||||| |||| ||| | | ||| ||||| | |||
Sbjct 85772 GGCAAGTCGACTCTGATGCGTGCCATCAACAACGAGCAGGTCG-AGGGTTTCCCCAAGCA 85714
Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTC 279565
|||||||| | ||| || | || ||||||||| | |||||
Sbjct 85713 GTCTGAGGTTAAGACCGTCTTCGTCGAGCACGACCTGGACTC 85672
Score = 95.1 bits (104), Expect = 2e-14
Identities = 165/236 (70%), Gaps = 12/236 (5%)
Strand=Plus/Minus
Query 280161 TCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTG 280220
|| || |||| |||||||| ||||| ||||| || ||||| || || ||||| ||||||
Sbjct 85076 TCGCGTATTGCCGTCATTGGTCCCAACGGTGCTGGCAAGTCGACTCTGATCAACGTCCTG 85017
Query 280221 ACTGGCGAG-----ACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGA 280275
||||| ||| |||| |||||| | | ||| |||| ||||| || |
Sbjct 85016 ACTGGTGAGCTGATTCCCA--CCACTGGTGAG---ATTTACCAGCACGAGAACATCCGTA 84962
Query 280276 TGGCTTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTA 280335
| || ||| | |||||||||||| |||||| || |||||||||||| ||| ||
Sbjct 84961 TTGCCTACATTAAGCAGCACGCTTTCGCCCACATTGATAACCACCTGGACTCGACCCCCT 84902
Query 280336 ACCAATACATTCAGTGGCGCTATGCA-AGTGGGCAGGATCTGGAGTCGGTGGATCG 280390
| ||||| |||||||| | | || | ||| |||||| ||| | |||| ||
Sbjct 84901 CGGAGTACATCCAGTGGCG-TTTCCAGACTGGTGAGGATCGCGAGACCATGGACCG 84847
Score = 84.2 bits (92), Expect = 4e-11
Identities = 121/168 (72%), Gaps = 2/168 (1%)
Strand=Plus/Minus
Query 280672 CCAAGCTGGGTCTGGACCCCGAGTTTACAACTCACTCTCGCATTCGCGGTCTTTCTGGAG 280731
|||| | |||||||| ||||| | ||||||| ||||| ||||| || || |
Sbjct 84520 CCAACTTTGGTCTGGATGCCGAGCTGGTTTCTCACTCGCGCATGAAGGGTCTGTCGGGTG 84461
Query 280732 GCCAGAAGGTCAAACTTGTCATCGGAGCA-GCTCTGTGGCAACACCCTCACGTGATCGTT 280790
| ||| ||||| |||| | | || |||| |||||| | |||||| |||| |||
Sbjct 84460 GTCAGCGTGTCAAGGTTGTGCTGGCTGCCTGCTC-GTGGCAGCGTCCTCACCTGATTGTT 84402
Query 280791 CTCGACGAGCCTACCAACTATCTGGACCGCGAGAGCCTGGGCGCTCTG 280838
|| || |||||||||||||| |||||||| || ||||| ||||||
Sbjct 84401 CTTGATGAGCCTACCAACTACCTGGACCGTGACTCTCTGGGTGCTCTG 84354
>seq53
Length=159929
Score = 105 bits (116), Expect = 1e-17
Identities = 409/637 (64%), Gaps = 7/637 (1%)
Strand=Plus/Plus
Query 293173 GAGATCTCCCACGATGTCTTGTACACTGCCTTGACATCAGGATGAATGCCAATAACCTTC 293232
|| ||||||||| |||||||||| ||||| ||| | |||| || |||
Sbjct 97938 GAAATCTCCCACACCGTCTTGTACAGCATCTTGATGTCATCGGGGATGCTGGGAATGTTC 97997
Query 293233 TGGATAGACCCTCCGTTGGCAATAATCTGGTTCTTCATTGTCTCGGACCA-AGTCCCACG 293291
||||| ||||| | ||||| || |||||||||| | || ||||| || |||| |
Sbjct 97998 TGGATCGACCCGTTCTCCGCAATGATGCGGTTCTTCATGTTATCCGACCACAGACCCAGG 98057
Query 293292 AGCAATGAGCTCGCGGACAAGGTAAGAGTTGACAACGGGGAACTCACCAGCGAGAGTGCG 293351
|| || ||||| | || | | ||||||||| ||||||| ||||| || ||
Sbjct 98058 TCCACCAAG-TCGCGCAGCAGCCACGGGTTGACAACCTGGAACTCGCCAGCCAGCACACG 98116
Query 293352 ACGGCTGTAAATGTTCGAAGTGATGGGTTCGGCTGCCTCAACAGACCCGCAAATCTGAGC 293411
|| ||||||||| ||||| || ||| ||| || |||||| |
Sbjct 98117 GCGCTGGTAAATGTTGGAAGTATACGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGCGA 98176
Query 293412 AGTAGATGCGGTAGGCATAAGAGCAGTCGTCAGAGAGTTCCTCACACC---CTTCTTGAC 293468
|| || || ||||| | ||| | ||| ||||| | |||||| || |||||
Sbjct 98177 CGTGCTGGCCGTCGGCATCGGCGCAAGCAGCAGCGAGTTGCGCACACCATGCTGCTTGAT 98236
Query 293469 ACGCGATTCGAGACCCGCCCAGTCC-AGAGCAGTCTGAGGTGTAACACCCCAGAGATGAT 293527
|| | ||| ||||||||| |||| ||| || || || ||| | | |
Sbjct 98237 CTGCTCCTTGAGCGATGCCCAGTCCCAGAGGTCGCTG-GGCGTGACGTTCCACATGTCAA 98295
Query 293528 ACTGCATGATACCCTTGCTGGCAGGAGACCCCTCAAAGGTGGGATGGGGGCCATGCTCAT 293587
|||||| || |||| | |||| || ||||| | || | | | || | ||| |
Sbjct 98296 ACTGCAGAATGCCCTGGGAAACAGGCGAGCCCTCGTACGTAGAGTACGTTCCCTCCTCCT 98355
Query 293588 CAGAGAGCTCGCAAGATGCCTCAACAGCAGCAAAGTAAATGTGCTCGAAGATCTCACGGT 293647
| | ||| || ||| | |||||| ||| ||| ||| ||||| | ||
Sbjct 98356 GCGCAATCTCCATCGACGCCGTCAGAGCAGCGTGGTAGATGGTCTCAAAGATTTGCGTGT 98415
Query 293648 TGAGCTTGCGAGCCTGCTCAGAGTCAAACGGCATCTTCAGCTGGAAGAACACATCCTGCA 293707
||||||||||||||| | || ||||| ||||| ||| ||||| ||||| ||
Sbjct 98416 TGAGCTTGCGAGCCTCGGCCGACTCAAAAGGCATGCGAAGCGCCAAGAAGGCATCCGCCA 98475
Query 293708 GACCCTGTACACCTACACCAACGGGGCGACGACGCTTGTTGCTCGTCTCTGCCTCGGGAA 293767
| ||||| ||||| ||||||| ||||| | ||| ||||||| ||| |||||||| |
Sbjct 98476 GGCCCTGGACACCAACACCAATAGGGCGGTGGCGCATGTTGCTGTTCTGCGCCTCGGGCA 98535
Query 293768 CCGCATATGCCATCACATCAATGCTCCTGTCCAGGTT 293804
| | || | || |||||| | | || ||||||
Sbjct 98536 CGGGGTAGTGGTTGACGTCAATGATGCGGTTCAGGTT 98572
>seq43
Length=230149
Score = 95.1 bits (104), Expect = 2e-14
Identities = 141/200 (71%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 279692 GCCAGTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCT 279751
||| || || || ||||||||||| ||||||||||||||||| || | || ||||| ||
Sbjct 214769 GCCCGTCGGATCGCTGTCGGGTGGATGGAAGATGAAGCTGGCGCTGGCGCGTGCCATGCT 214710
Query 279752 ACTGCGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGT 279811
| ||||| || || ||||| || ||||| || |||||| |||| |||||||
Sbjct 214709 GCAAAAGGCCGACGTGCTGCTGCTGGACGAGCCGACTAACCACCTGGATGTTGCCAACGT 214650
Query 279812 AGCCTGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCA 279871
||||| | |||||| | | | | | || | || |||||||| |||||
Sbjct 214649 CAAGTGGCTCGAAAACTACCTCAAGACGCACCCGGACATTACGTCGCTCATTGTGTCTCA 214590
Query 279872 CGACTCTGGCTTCCTAGATG 279891
|||| |||||||| ||||
Sbjct 214589 CGACAGCGGCTTCCTCGATG 214570
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027835799143916
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |