Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03- 01] 76 sequences; 29,468,565 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq18 450 3e-121 seq53 432 7e-116 >seq18 Length=597235 Score = 450 bits (498), Expect = 3e-121 Identities = 625/865 (72%), Gaps = 38/865 (4%) Strand=Plus/Minus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| |||||||||||||| || ||| |||||| |||||||||||||| ||| Sbjct 244919 ATCTGGCAGATGTACAAGAAGGCCGAGGCGTCCTTCTGGACGGCCGAGGAGATTGATCTG 244860 Query 42360 GCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGA----GAACGAAAAGTTTTTCCTCAA 42415 ||||||| || |||| | || | ||| | ||||||||| ||| || Sbjct 244859 TCCAAGGATCTCCACGACTGGAACA-ACCGCATGAACAAGGACGAAAAGTACTTCATCTC 244801 Query 42416 AAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAG 42475 || | || |||||||| |||||||| || ||||| ||||| |||||||||| | Sbjct 244800 GCACGTCCTCGCCTTCTTTGCCGCCTCAGATGGCATTGTCAACGAGAACCTGGTTGAGCG 244741 Query 42476 GTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCAT 42535 ||| ||||| ||| | |||||| ||||||||||||||||||||||| || Sbjct 244740 CTTCTCAGGCGAGGTCCAGATCCCTGAGGCCCGCTGCTTCTACGGCTTCCAGATCATGAT 244681 Query 42536 AGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCC 42592 |||||| | ||||| ||| |||| | ||||||| ||||||||||| ||| || Sbjct 244680 GGAGAACATCCACTCCGAGACGTACTCG---CTGCTCATCGACACGTACATCAAGGAGCC 244624 Query 42593 CGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGC 42652 || | |||| | | |||||||| ||||| || || || ||||||||| ||||| Sbjct 244623 CGCCCAGCGCAGCTACCTGTTCAACGCCATCGACACCATTCCCTGCATCCGCCGCAAGGC 244564 Query 42653 GGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGC 42712 |||||||| ||||| ||||| | | ||| | || || | | || | ||||| || Sbjct 244563 CGACTGGGCCCTCAAGTGGATTGCCGACCACGAGTCGACCTTTGCCCAGCGCCTGGTGGC 244504 Query 42713 CTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCT--- 42769 |||| ||||||||||||||||||||||||| |||||||| |||||||| |||||||| Sbjct 244503 CTTTGCCGCCGTCGAGGGCATCTTCTTCTCCGGCGCCTTTGCCTCCATTTTCTGGCTGCG 244444 Query 42770 CAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGA 42829 ||||| ||| | ||||||||| || ||||| || ||||| || || | ||||| Sbjct 244443 CAAGC--GTGGTCT-GATGCCCGGCCTGACCTTTTCCAACGAGCTGATTTCGCGCGACGA 244387 Query 42830 GGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAA--GCCC 42887 ||| ||||| | |||||||||||||| || |||||| ||||| | |||| |||| Sbjct 244386 GGGCCTGCACACCGACTTTGCCTGCCTGCTCTTCTCG---CACCT---GAACAACCGCCC 244333 Query 42888 TCG-AAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCT 42946 | ||| ||| | || |||||||| || ||||| | || |||||||||||||| Sbjct 244332 CAGCAAGAAGCTCATTGAGGAAATCATCACTGATGCCGTCGTCATTGAGAAGGAGTTCCT 244273 Query 42947 CACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACAT 43006 || || | |||||| ||||| ||||||||||| |||||||||| ||||||| Sbjct 244272 GACTGAGGCCCTGCCCTGCGCCCTGCTCGGCATGAACGCCGACCTCATGAAGCAGTACAT 244213 Query 43007 CCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGC--CG----CCTCTACAA 43060 ||| |||||||||| ||| || | ||| ||| || || ||||| Sbjct 244212 TGAGTTTGTCGCCGACCGTCTGCT------GGTGGCCCTCGGCAACGAAAAGGTCTACCG 244159 Query 43061 CACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTT 43120 | | || |||||| ||||||||||||||||||||| | | |||||||||||||| || Sbjct 244158 CTCCACGAACCCCTTTGACTTTATGGAGAACATCTCGCTCGGTGGCAAGACCAACTTCTT 244099 Query 43121 CGAGAAGCGCGTCGCCGACTACCAG 43145 |||||||| || | |||||||||| Sbjct 244098 TGAGAAGCGTGTTGGCGACTACCAG 244074 >seq53 Length=159929 Score = 432 bits (478), Expect = 7e-116 Identities = 1242/1893 (66%), Gaps = 67/1893 (4%) Strand=Plus/Plus Query 243735 CCACGCTGAACTGGACGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCT 243794 |||| ||||||||| ||| || | || |||| || | ||||||||||||||| |||| Sbjct 97741 CCACAGTGAACTGGATGGGCGCAGCAGCAGCCTGCGTACGCAGGTAGTACATGCCCGTCT 97800 Query 243795 TGAGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTG 243854 |||| || |||| | | ||||||| || | ||| ||| | | Sbjct 97801 TGAGACCCAGCTTCCAGCCCGCAAAGTGCATGCTGGTAATCTTGCCCATGGTAGG----- 97855 Query 243855 GGTCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCT 243914 ||||| || || |||||| ||||| |||||| | ||| | | || | Sbjct 97856 ----GTCCTT---CATGTGGATGTTGAGCGACTGCGACTGGTCAATGAACGCTCCGCGGT 97908 Query 243915 CTGCGGCCATGGTGATGAG-GTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGC 243973 | || ||||| | | || | ||| || ||||| || |||||||||| | | Sbjct 97909 CGGCAGCCATCTGCACAACCGTGCG-CTGCGAAATCTCCCACACCGTCTTGTACAGCATC 97967 Query 243974 TTGAGGTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGG 244033 |||| || ||||||| | |||||||| | ||| || || | | |||| || Sbjct 97968 TTGATGTCATCGGGGATGCTGGGAATGTTCTGGATCGACCCGTTCTCCGCAATGATGCGG 98027 Query 244034 GTGCGCATGTTATCGTTCCACAGGCCCAAGCGCTCCAGCGCCTCGACCAGGTGCCT---G 244090 | ||||||||| |||||| |||| | |||| | ||| ||| ||| | Sbjct 98028 TTCTTCATGTTATCCGACCACAGACCCAGG---TCCACCAAGTCGCGCAGCAGCCACGGG 98084 Query 244091 TTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGC 244150 || || ||||| ||||| || | |||||| ||||||||||| | |||| | |||| Sbjct 98085 TTGACAACCTGGAACTCGCCAGCCAGCACACGGCGCTGGTAAATGTTGGAAGTATACGGC 98144 Query 244151 TCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACC 244210 |||| || ||| |||||||||| ||||||| |||||| || |||||||| |||| | | Sbjct 98145 TCGAAGCACTCGTTGTTGCCCAGAATCTGCGACGTGCTGGCCGTCGGCATCGGCGCAAGC 98204 Query 244211 AGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCAC 244270 ||||| ||| | ||| || ||| || ||| | ||||| ||||||||| Sbjct 98205 AGCAGCGAGTTGCGCACACCATGCTGCTTGATCTGCTCCTTGAGCGATGCCCAGTCCCA- 98263 Query 244271 ATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTG 244330 |||||| | | ||| | |||||||||||||||||| | |||| | Sbjct 98264 --------GAGGTCGCTGGGCGTGACGTTCCACATGTCAAACTGCAGAATGCCCTGGGAA 98315 Query 244331 ACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTT-ACAGCTCTC 244389 || || ||||||||| || | ||| | || || ||| || | || | | | Sbjct 98316 ACAGGCGAGCCCTCGTACGTAGAGTACGTTCCCTCCTCCTGCGCAATCTCCATCGACGCC 98375 Query 244390 GTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCC 244449 ||| || || |||| |||||||||||| ||||| | |||| | | ||| |||| | | Sbjct 98376 GTC-AGAGCAGCGTGGTAGATGGTCTCAAAGATTTGCGTGTTGAGCTTGCGAGCCTCGGC 98434 Query 244450 GCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCC 244509 | || || |||| | | || |||| | || ||||| ||||| || || | || Sbjct 98435 CGACTCAAAAGGCATGCGAAGCGCCAAGAAGGCATCCGCCAGGCCCTGGACACCAACACC 98494 Query 244510 GATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTC 244569 || || | ||| ||| ||||| | | || |||||||||||||| |||| |||| Sbjct 98495 AATAGGGCGGTGGCGCATGTTGCTGTTCTGCGCCTCGGGCACGGGGTAGTGGTTGACGTC 98554 Query 244570 GATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTC 244629 || | ||| |||||||| | | | ||| ||| |||| ||| ||||| Sbjct 98555 AATGATGCGGTTCAGGTTGCGCACAACTACCTTGGTGACCTCGTGCAGCTTCTGGAAGTC 98614 Query 244630 GTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGC 244689 |||||||| || | | || || |||||| || || | || Sbjct 98615 GTACTCGTT------CTTG----TTGTAGTCG--ACAAACGACGGCAGAGCCAGCGAAGC 98662 Query 244690 CAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTT 244749 ||||||||| ||||| ||||| |||| ||||| || |||||| ||||| ||||| Sbjct 98663 CAGGTTGCACACGGCAACCTCATCCGGCGCACAGTACTCGATAATCTCCGTGCACAGGTT 98722 Query 244750 ACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTA 244809 || |||||||||||||| || || ||| |||| ||||||| ||||||||| Sbjct 98723 GGAGCTGCGGATGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTA 98782 Query 244810 GAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCT 244869 |||||||| || || |||||| ||| || | || | | || ||| || | | Sbjct 98783 CAGCATGAACGGGTTGCCAGTCTCGGTCTGCGCCTCCAGAATGGCGTACCACAGCTTCTG 98842 Query 244870 AGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAA 244929 ||||||| || ||| | |||||| |||||| |||||| ||||| || Sbjct 98843 GGCCTTGATCGAGGCACGACCGCGGCCCTCCTGCTCGTACTTTTCGTACAGCGCCTCAAA 98902 Query 244930 CTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCACTC 244989 ||| ||| || ||| | ||||| |||||| |||||||| ||| |||| || Sbjct 98903 CTCCTCGCCGTAGCAGTCGGCCAGGCCAGGGCACTCGTTGGGGCACATCAGAGTCCAGTC 98962 Query 244990 GCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTC 245049 || | || ||| | || |||||| ||||| |||||||| || ||| |||| || || Sbjct 98963 AGCGTTCTTCTCGACACGCTTCATGAACAGGTCAGGGATCCACAGAGCCAGGAAAAGATC 99022 Query 245050 CCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTC 245109 | || | ||| ||| ||| |||||| | ||| || | || ||||| || || Sbjct 99023 ACGGGCGCGAACCTCTTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAACTCAAACACATC 99082 Query 245110 GACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTC 245169 | ||||||| ||||||| ||| | || | ||| ||||| ||||||||||| |||||||| Sbjct 99083 GGCGTGCCACGGCTCCAGGTAAATGGCAAAGGCACCGGGGCGCTTGTTGCCACCCTGGTC 99142 Query 245170 CACCATCCTCTCGAGC-GCGTTG---AAGATGCGCAGGGTAGGCACTATGCCGTTAGAGT 245225 | | | || || | |||| || | ||||| | || | |||||||| ||| Sbjct 99143 GA----CGTAGCGGGCAGTGTTGTTAAACACACGCAGCATGGGAATGATGCCGTTGGAGG 99198 Query 245226 GGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACAT----G 245281 ||||||||||| ||||| | |||| || | | || ||| | ||||||| Sbjct 99199 TACCGTTGGTGCCGGCAATGTACGAGCCCGTGGC---GCGGATGC-GGTGGACATTGAGA 99254 Query 245282 CCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCC 245341 || | || || || ||||||||| | || ||| |||||| ||| || |||||| Sbjct 99255 CCGATACCACCCGCCATCTTGGAGATCATAGCACAGGTCTTGAGGGTATCGTAAATGCCC 99314 Query 245342 TCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTG 245401 || || |||| |||||||| || ||| ||||| || |||||||||| || ||| | Sbjct 99315 TCAATCGAGTCCTCCTTCATGTCGACCAGGAAGCAAGACGACAGCTGGGCCTGGGGCGTA 99374 Query 245402 CACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGAGAGGAACCCGTAC 245461 | | ||||||||| ||||| ||| ||||| ||| | |||||| | || |||| Sbjct 99375 CCAGCGTTGAACAGCGTGGGCGAGGCATGGGTGAAGAACTTGCTCGACATGAGGTTGTAC 99434 Query 245462 GTCTGGAGCAGAGCG-TCGATGTTGTCGCCGTGGATCTGCAGGGCGCAC-CTCATGAGGG 245519 |||| | | ||| |||| ||||||| ||| | || ||| | ||| | Sbjct 99435 GTCTCAATGA-CGCGATCGACTCTGTCGCCCCAGATGCCAACAGC-CACACGCATAATCA 99492 Query 245520 TGTGCTGGGGCGTCTCGATGGGTCCCTCGGGTCC--CTTGAGCATGTAGGAGCGCTCGAG 245577 |||||||||| ||||| | | |||| ||| | || ||| |||||||| || Sbjct 99493 TGTGCTGGGGACGCTCGA--CAATCTTGCCGTCCAGCTTCAACAGGTACGAGCGCTCCAG 99550 Query 245578 CGTCTTGAACCCAAAGTACGAGTAGCCAAAGTC 245610 |||||||| ||||||||| |||| ||||| Sbjct 99551 GGTCTTGAAGCCAAAGTACTGGTAGTTGAAGTC 99583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944338302877760