Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03-
01] 76 sequences; 29,468,565 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq5 120 7e-22
seq15 107 5e-18
>seq5
Length=956377
Score = 120 bits (132), Expect = 7e-22
Identities = 141/191 (74%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || ||||| || ||||||| ||||||||| ||||| || | || || || || |||
Sbjct 899441 TCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGACCGTCCTCCAGCTGCTTACCAGCAAAG 899500
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
||||||||||| || | || || || || || ||||| || || | || |||||
Sbjct 899501 ATCAGACGCTGCTGGTCAGGGGGAATACCCTCCTTGTCCTGAATCTTGGACTTGACGTTG 899560
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| || | ||| ||| || || || ||||| || ||||| || ||||| ||||||||
Sbjct 899561 TCAATGGTATCCGACGACTCAACCTCCAGCGTAATGGTCTTGCCAGTCAGCGTCTTGACA 899620
Query 288463 AATATCTGCAT 288473
|| ||||||||
Sbjct 899621 AAGATCTGCAT 899631
Score = 107 bits (118), Expect = 5e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || || | || || || |||| || || || || || || ||||| | |
Sbjct 899633 CCACCACGAAGACGGAGAACCAGGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCCGAG 899692
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|||||||| ||||| || | || || || ||||| || |||||||| || |||
Sbjct 899693 AGCGTGCGACCGTCCTCGAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGGTCCGGAGGG 899752
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || || || ||||| || |||| ||||| || || || | ||| || || ||
Sbjct 899753 ATACCCTCCTTGTCCTGAATCTTCGACTTCACATTGTCAATGGTGTCGGATGACTCCACC 899812
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || || || ||||| ||||| ||||||||||| || ||||||||
Sbjct 899813 TCCAGAGTAATGGTCTTGCCGGTAAGAGTCTTGACAAAGATCTGCAT 899859
Score = 91.5 bits (100), Expect = 3e-13
Identities = 143/205 (70%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || || | || ||||| || | ||| || || ||||| || ||||| |
Sbjct 900146 CCACCACGCAGACGCAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 900205
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| ||||| ||||| || | || || || || |||||||||||||| ||| ||
Sbjct 900206 AGAGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCCGGAGGA 900265
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || || || ||||| || || | || ||||| || |||| ||| ||||| ||
Sbjct 900266 ATACCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATAGTGTCGGAAGATTCCACC 900325
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCA 288451
|| || ||||| ||||| || ||||
Sbjct 900326 TCAAGGGTGATGGTCTTGCCCGTCA 900350
>seq15
Length=634592
Score = 107 bits (118), Expect = 5e-18
Identities = 144/199 (72%), Gaps = 6/199 (3%)
Strand=Plus/Minus
Query 288278 TGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTG 288337
|||| | || ||||| || ||||||| || ||||| || || || | || || || |
Sbjct 108850 TGCTGACCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCCAGCTGCTTGCCAG 108791
Query 288338 CGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTT 288394
|||||||||| ||||| ||| || ||| || || || || |||||||| || | |
Sbjct 108790 CGAAGATCAGGCGCTGCTGA---TCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACT 108734
Query 288395 TCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAG 288454
| || || || || | || || || || ||||| || |||||||| || ||||| |
Sbjct 108733 TGACATTGTCGATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTCAGGG 108674
Query 288455 TCTTGACGAATATCTGCAT 288473
|||||||||| ||||||||
Sbjct 108673 TCTTGACGAAAATCTGCAT 108655
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179653251311528
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |