Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03- 01] 76 sequences; 29,468,565 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq5 120 7e-22 seq15 107 5e-18 >seq5 Length=956377 Score = 120 bits (132), Expect = 7e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||||| ||||||||| ||||| || | || || || || ||| Sbjct 899441 TCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGACCGTCCTCCAGCTGCTTACCAGCAAAG 899500 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||||| || | || || || || || ||||| || || | || ||||| Sbjct 899501 ATCAGACGCTGCTGGTCAGGGGGAATACCCTCCTTGTCCTGAATCTTGGACTTGACGTTG 899560 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| ||| || || || ||||| || ||||| || ||||| |||||||| Sbjct 899561 TCAATGGTATCCGACGACTCAACCTCCAGCGTAATGGTCTTGCCAGTCAGCGTCTTGACA 899620 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 899621 AAGATCTGCAT 899631 Score = 107 bits (118), Expect = 5e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || || || |||| || || || || || || ||||| | | Sbjct 899633 CCACCACGAAGACGGAGAACCAGGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCCGAG 899692 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 |||||||| ||||| || | || || || ||||| || |||||||| || ||| Sbjct 899693 AGCGTGCGACCGTCCTCGAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGGTCCGGAGGG 899752 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || ||||| || |||| ||||| || || || | ||| || || || Sbjct 899753 ATACCCTCCTTGTCCTGAATCTTCGACTTCACATTGTCAATGGTGTCGGATGACTCCACC 899812 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || ||||| ||||| ||||||||||| || |||||||| Sbjct 899813 TCCAGAGTAATGGTCTTGCCGGTAAGAGTCTTGACAAAGATCTGCAT 899859 Score = 91.5 bits (100), Expect = 3e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || ||||| || | ||| || || ||||| || ||||| | Sbjct 900146 CCACCACGCAGACGCAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 900205 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| ||||| || | || || || || |||||||||||||| ||| || Sbjct 900206 AGAGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCCGGAGGA 900265 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || ||||| || || | || ||||| || |||| ||| ||||| || Sbjct 900266 ATACCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATAGTGTCGGAAGATTCCACC 900325 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCA 288451 || || ||||| ||||| || |||| Sbjct 900326 TCAAGGGTGATGGTCTTGCCCGTCA 900350 >seq15 Length=634592 Score = 107 bits (118), Expect = 5e-18 Identities = 144/199 (72%), Gaps = 6/199 (3%) Strand=Plus/Minus Query 288278 TGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTG 288337 |||| | || ||||| || ||||||| || ||||| || || || | || || || | Sbjct 108850 TGCTGACCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCCAGCTGCTTGCCAG 108791 Query 288338 CGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTT 288394 |||||||||| ||||| ||| || ||| || || || || |||||||| || | | Sbjct 108790 CGAAGATCAGGCGCTGCTGA---TCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACT 108734 Query 288395 TCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAG 288454 | || || || || | || || || || ||||| || |||||||| || ||||| | Sbjct 108733 TGACATTGTCGATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTCAGGG 108674 Query 288455 TCTTGACGAATATCTGCAT 288473 |||||||||| |||||||| Sbjct 108673 TCTTGACGAAAATCTGCAT 108655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179653251311528