Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03- 01] 76 sequences; 29,468,565 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq18 107 4e-18 seq57 93.3 9e-14 >seq18 Length=597235 Score = 107 bits (118), Expect = 4e-18 Identities = 250/376 (66%), Gaps = 6/376 (2%) Strand=Plus/Minus Query 243353 CCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCA 243412 |||| || |||||||| || ||| ||||||| ||||| | || |||||| | | Sbjct 244459 CCATTTTCTGGCTGCGCAAGCGTGGTCTGATGCCCGGCCTGACCTTTTCCAACGAGCTGA 244400 Query 243413 TCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAGCTCCAGA 243472 | |||||||||||||| ||| | || | || | | || || || || Sbjct 244399 TTTCGCGCGACGAGGGCCTGCACACCGACTTTGCCTGCCTGCTCTTCTC---GCACCTGA 244343 Query 243473 ACAAGCTACCATTCGAAACGGTCA---AACAAATCATCACAGAAGCAGTTGAAAACGAAA 243529 |||| | || | | | | ||| | |||||||||| || || || | | || | Sbjct 244342 ACAACCGCCCCAGCAAGAAGCTCATTGAGGAAATCATCACTGATGCCGTCGTCATTGAGA 244283 Query 243530 AGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCATGG 243589 |||| ||| | || || | || ||| || | ||||||||| | || |||||| Sbjct 244282 AGGAGTTCCTGACTGAGGCCCTGCCCTGCGCCCTGCTCGGCATGAACGCCGACCTCATGA 244223 Query 243590 GACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGT 243649 |||||||| || || || |||||||| | | | || || || | || || || | Sbjct 244222 AGCAGTACATTGAGTTTGTCGCCGACCGTCTGCTGGTGGCCCTCGGCAACGAAAAGGTCT 244163 Query 243650 ACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACT 243709 || ||||| ||||||||||| |||||||||| ||| ||||| || || || |||| Sbjct 244162 ACCGCTCCACGAACCCCTTTGACTTTATGGAGAACATCTCGCTCGGTGGCAAGACCAACT 244103 Query 243710 TCTTCGAAAAGCGTGT 243725 |||| || |||||||| Sbjct 244102 TCTTTGAGAAGCGTGT 244087 >seq57 Length=131118 Score = 93.3 bits (102), Expect = 9e-14 Identities = 481/743 (65%), Gaps = 56/743 (8%) Strand=Plus/Plus Query 333637 TGATACCCTCGAGGAACCCGGGCTCGGGGAACTTCCACGTGGTCTTCGTCTCGGTAAGGG 333696 ||| |||||| ||||| |||||||||||||| | || ||| || | || Sbjct 85181 TGACACCCTCAAGGAAACCGGGCTCGGGGAAGGTGAACTCAATCTCCGAGGCACCCAGCT 85240 Query 333697 CGTAGTA--ACTCG-CTGATTCGGGACGCTTCTTCACGAACTCGGACAGATTTCCCTTGT 333753 ||||||| ||| | | || ||| | |||||| |||||||| | ||| || || || Sbjct 85241 CGTAGTACGACTTGGCCGA---GGGGCACTTCTTGACGAACTCAGCCAGGTTACCACGGT 85297 Query 333754 ACTTCTTCAGCTTTAGGTTAGGTTCGTAATGGATAATAGAGGTG-CAAACAGCGTCGAGG 333812 | ||| ||||| | | | ||||| |||||||| | | || || || ||||||| Sbjct 85298 AGCGCTTAAGCTTGAAGC---GCTCGTAGTGGATAAT-GTGCTGGCAGACGTTGTCGAGG 85353 Query 333813 AACCCGGAGTCGTGTGACACAATCACGCACGAAACGTCCTTAAGG----TTGATCAGGTA 333868 || || |||||||| |||||||| | |||| || | | || ||| |||||| Sbjct 85354 AAACCAGAGTCGTGAGACACAATGAT---CGAA--GTGC--AGGGCGAGTTGCACAGGTA 85406 Query 333869 TTCAATCAGCCACCTCACGTTAGACACAGAAAGATGGTTGGTCGGCTCGTCAAGAAGTAG 333928 || ||||||| | ||||| |||| ||||||||||| |||||||| ||||| || Sbjct 85407 GTCCTCCAGCCACTTGACGTTCTTCACATCCAGATGGTTGGTGGGCTCGTCCAGAAGCAG 85466 Query 333929 TAGCTTTGCGTTCAGGAGCATTGCACGTGCA-AGAGCGAGTTTCATTTTCCACCCTCCTG 333987 | | | | | || | ||||| ||| ||||| || ||||| ||||| || || | Sbjct 85467 AATATCGGGGGCCTCGAAGACGGCACG-GCACAGAGCCAGCTTCATCTTCCAACCACCAG 85525 Query 333988 AAAGAGTGTTAATTGGG--GCAGATTGGC-GCTCAATATCAAAGCC-AACCGATTCTAGA 334043 | |||| | ||| || || | |||| | ||||| ||| | || || Sbjct 85526 ACAGAGCGGAAATCTCACCGCTAATCATCTGCTCGGTG---AAGCCGAACTCAATC-AGC 85581 Query 334044 GTAGTTACGATCTTTTCA-----CGAG---AC-CAAATGTTTTCCTTTACTTGTTCATCA 334094 | |||| || || |||| || | | || ||| ||| ||||| Sbjct 85582 TGCTTGACGACCTCATCCTTGGTCGAGGTGACACCAGCGTCCTCCAG--CTTCTTCAT-- 85637 Query 334095 TTGGCAATGAAGTCAATGATAGCCATGTTAGAATCGGACCCGTCGAGATCGTGTTCCACG 334154 || | |||||||| | | ||| | || |||| ||| || ||||| || ||| Sbjct 85638 --GG---TCCAGTCAATGGTGGTCATCTCAGTGTCGGCAGAGTCCAGGTCGTGCTCGACG 85692 Query 334155 TAAGCAGTTTTCAAAACATCCG-CAGA--GGGGAACCCTTCAAGCTGACCGTTCACAATA 334211 | | || || ||| || | | | |||||| || || | ||| |||| || Sbjct 85693 AAGACGGTCTT---AACCTCAGACTGCTTGGGGAAACCCTCGACCTGCTCGTTGTTGATG 85749 Query 334212 GCGCGCATCAGAGTTGATTTACCCGCCCCGTTTGGCCCACACAGACCGTAGCGGTTTCCA 334271 || ||||||||||| || || |||| ||||| || || |||||||||||||| | ||| Sbjct 85750 GCACGCATCAGAGTCGACTTGCCCGAACCGTTGGGACCGCACAGACCGTAGCGCTGGCCA 85809 Query 334272 CGCTTCAGATTGAACCGCGTATTGTTCAGAAGAATTTTTCCACCATATGCCAGAGAAAAT 334331 |||||||| | | || | ||| || ||||| || |||| || ||||| || || Sbjct 85810 CGCTTCAGGCGCAGATGGGTCTGGTTAAGCAGAATCTTGGCACCGTAGGCCAGCGAGAAG 85869 Query 334332 TCACAATCACACAGATCCTCACC 334354 || | ||||| ||||| || Sbjct 85870 GTGCAGTTGCACAGGTCCTCGCC 85892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102878926070600