Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03- 01] 76 sequences; 29,468,565 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq53 188 9e-43 seq18 141 1e-28 >seq53 Length=159929 Score = 188 bits (208), Expect = 9e-43 Identities = 855/1339 (64%), Gaps = 31/1339 (2%) Strand=Plus/Plus Query 113903 TTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGC 113962 |||||||| ||||| || || || || | | | || || |||| || || ||| Sbjct 98085 TTGACAACCTGGAACTCGCCAGCCAGCACACGGCGCTGGTAAATGTTGGAAGTATACGGC 98144 Query 113963 TCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATGGGTGCCATG 114022 || |||||||| ||||| |||| || || | ||| ||| || ||||| || || | Sbjct 98145 TCGAAGCACTCGTTGTTGCCCAGAATCTGCGACGTGCTGGCCGTCGGCATCGGCGCAAGC 98204 Query 114023 AGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAG 114082 || || ||| || | ||| | | | | || | |||||||| | ||||||| || Sbjct 98205 AGCAGCGAGTTGCGCACACCATGCTGCTTGATCTGCTCCTTGAGCGATGCCCAGTCCCAG 98264 Query 114083 TTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGAGGCTGGCGAT 114142 | | | | | | |||||| |||||||| || || || ||||| | ||||| Sbjct 98265 AGGTCGCTGGGCGTGACGTTCCACATGTCAAACTGCAGAATGCCCTGGGAAACAGGCGAG 98324 Query 114143 CCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCT 114202 ||||| | || ||| | ||||| ||| ||| | || |||| || || Sbjct 98325 CCCTCGTACGTAGAGTACGTTCCCTCCTCCTGCGCAATCTCCATCGACGCCGTCAGAGCA 98384 Query 114203 GCGTGATACATTGTCTCAAAAATGCGAGCATTCA--TTGCCTTGGCCTCGTCGGAATCAA 114260 ||||| || || |||||||| || | | || | |||| |||||| | || |||| Sbjct 98385 GCGTGGTAGATGGTCTCAAAGATTTGCGTGTTGAGCTTGCGA--GCCTCGGCCGACTCAA 98442 Query 114261 ACGCGAGTCG--GCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGG 114318 | | | || || | || || ||||||| || || |||||||| | ||||| || Sbjct 98443 AAGGCATGCGAAGCGCCAAG--AAGGCATCCGCCAGGCCCTGGACACCAACACCAATAGG 98500 Query 114319 GCGATGTCTCATATTAGACTTTCGAGCGGTCTC---CACGGGATAAAAATTCCTATCGAT 114375 ||| || | ||| || || | || ||| |||||| || || || || Sbjct 98501 GCGGTGGCGCATGTTGCTGTTCTGCGC---CTCGGGCACGGGGTAGTGGTTGACGTCAAT 98557 Query 114376 AACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAA 114435 | | || || || || ||||| |||| || || ||||| | | | || | Sbjct 98558 GATGCGGTTCAGGTTGCGCACAACTACCTTGGTGACCTCGTGCAGCTTCTGGAAGTCGTA 98617 Query 114436 ACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGA 114495 | | | | | |||| || || || || | || ||||| || ||||| | Sbjct 98618 CTCGTTCTTGTTGTAGTCGACAAACGACGGCAGAGCCAGCGAAGCCAGGTTGCACACGGC 98677 Query 114496 GGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGT 114555 ||||||| || |||||| ||||| ||||| |||| || || || ||||| Sbjct 98678 AACCTCATCCGGCGCACAGTACTCGATAATCTCCGTGCACAGGTTGGAGCTGCGGATGGT 98737 Query 114556 GCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGT 114615 ||||| |||||| || || ||| ||| || |||||||| |||||| | || | Sbjct 98738 GCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTACAGCATGAACGGGTT 98797 Query 114616 CCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCGGCTGGCACAGTGG 114674 || ||||| || || | || ||||| || | ||| | | || | | || | | | || Sbjct 98798 GCCAGTCTCGGTCTGCGCCTCCAGAATGGCGTACCACAGCTTCTGGGCCTTGATC-GAGG 98856 Query 114675 CGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGG 114734 | | || ||||||| |||||||||| ||| || || |||||||| || || | Sbjct 98857 CACGACCGCGGCCCTCCTGCTCGTACTTTTCGTACAGCGCCTCAAACTCCTCGCCGTAGC 98916 Query 114735 CCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAA 114794 || | || || || || | ||||| | |||| ||| | | | || ||| | Sbjct 98917 AGTCGGCCAGGCCAGGGCACTCGTTGGGGCACATCAGAGTCCAGTCAGCGTTCTTCTCGA 98976 Query 114795 CACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTT 114854 ||||||||||||| ||||| |||||||| ||||| ||| ||||| || |||| | | Sbjct 98977 CACGCTTCATGAACAGGTCAGGGATCCACAGAGCCAGGAAAAGATCACGGGCGCGAACCT 99036 Query 114855 CTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTT 114914 |||| | || || || |||| || | || || | | ||| ||||||||||| | Sbjct 99037 CTTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAACTCAAACACATCGGCGTGCCACGGCT 99096 Query 114915 CCAGGTACACCGCGATTG-AC-----CCCTTACGACGACCAGCCTGGTTTACATACCTCG 114968 ||||||| | || | | || | ||| | | ||| |||||| || || | | Sbjct 99097 CCAGGTAAATGGCAAAGGCACCGGGGCGCTT--GTTG-CCACCCTGGTCGACGTAGCGGG 99153 Query 114969 CTGTGGCATTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCC 115028 | ||| ||||| || || ||||| |||||||| || | || || || || || Sbjct 99154 CAGTGTTGTTAAACACACGCAGCATGGGAATGATGCCGTTGGAGGTACCGTTGGTGCCGG 99213 Query 115029 GAA--TACGAGACTTATTGGCTCTGACATCATGGATGTGCATACCAATACCCCCTGCCCA 115086 || |||||| | |||| | || |||| | | ||| ||||| || ||| Sbjct 99214 CAATGTACGAGCC--CGTGGCGCGGATGCGGTGGACATTGAGACCGATACCACCCGCCAT 99271 Query 115087 CTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTT 115146 ||| ||||| || || | |||| | |||| || || || |||||||| |||| Sbjct 99272 CTTGGAGATCATAGCACAGGTCTTGAGGGTATCGTAAATGCCCTCAATCGAGTCCTCCTT 99331 Query 115147 ATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCT-TGGTGTACCAGCGTTGAAGAGGG 115205 | ||| |||||||| ||||| || ||||| || |||||||||||||| || | Sbjct 99332 CATGTCGACCAGGAAGCAAGACGACAGCTG-GGCCTGGGGCGTACCAGCGTTGAACAGCG 99390 Query 115206 TTGGTGTCGCGTGGATGAA 115224 | || | || ||| |||| Sbjct 99391 TGGGCGAGGCATGGGTGAA 99409 >seq18 Length=597235 Score = 141 bits (156), Expect = 1e-28 Identities = 528/818 (65%), Gaps = 25/818 (3%) Strand=Plus/Plus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCT-GATATTCTCCA 125816 |||||| ||||| |||||||| |||||||| ||||| || || ||| ||| ||||||| Sbjct 244077 GTAGTCGCCAACACGCTTCTCAAAGAAGTTGGTCTTGCCA-CCGAGCGAGATGTTCTCCA 244135 Query 125817 TAAAATCAAATGGGTTCTTTGAGTTCCAAA-----TTGTTGGC-ACCCCAATCTGTTTGA 125870 |||| ||||| |||||| | ||| | | | |||| | | | | | | Sbjct 244136 TAAAGTCAAAGGGGTTCGTGGAGCGGTAGACCTTTTCGTTGCCGAGGGCCACC------A 244189 Query 125871 GGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGA 125930 | ||||| || | ||| |||||||||||| ||| || | |||||| |||| | Sbjct 244190 GCAGACGGTCGGCGACAAACTCAATGTACTGCTTCATGAGGTCGGCGTTCATGCCGAGCA 244249 Query 125931 GGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGA 125990 || || || || || || | |||| |||||||||| | ||||| || | || Sbjct 244250 GGGCGCAGGGCAGGGCCTCAGTCAGGAACTCCTTCTCAATGACGACGGCATCAGTGATGA 244309 Query 125991 TGGCGTGAATGGTGTCCACCCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGGCAA 126050 | | | |||| | | | || | ||| || | |||||| ||||| Sbjct 244310 TTTCCTCAATGAGCTTCTTGCTGGGGCGGTTGTTCAGGTGCGAGAAGAGCAGGCAGGCAA 244369 Query 126051 ACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCA 126110 | || ||| || |||||||| || || || || || || || ||| ||| || |||| Sbjct 244370 AGTCGGTGTGCAGGCCCTCGTCGCGCGAAATCAGCTCGTTGGAAAAGGTCAGGCCGGGCA 244429 Query 126111 TGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCT 126170 | ||||| ||||| || ||||||||| | ||| | || ||||||||||| |||| Sbjct 244430 TCAGACCACGCTTGCGCAGCCAGAAAATGGAGGCAAAGGCGCCGGAGAAGAAGATGCCCT 244489 Query 126171 CCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACT--TTGT-GTCAAACC 126227 | || || || || | || |||| ||||||| ||||| | || | ||| || Sbjct 244490 CGACGGCGGCAAAGGCCACCAGGCGCTGGGCAAAGG---TCGACTCGTGGTCGGCAATCC 244546 Query 126228 ACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGA 126287 |||| | ||||| | ||||| ||| || || | ||| | ||| || | || | Sbjct 244547 ACTTGAGGGCCCAGTCGGCCTTGCGGCGGATGCAGGGAATGGTGTCGATGGCGTTGAACA 244606 Query 126288 GTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGC 126347 | | | | | || || ||||||||| | || ||||| || || || ||| Sbjct 244607 GGTAGCTGCGCTGGGCGGGCTCCTTGATGTACGTGTCGATGAGCAGCGAGTACGTCTCGG 244666 Query 126348 CGTGGACCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGT 126406 ||||| | | ||| || | ||| | ||||||| |||| || || ||||| Sbjct 244667 AGTGGATGTTCTCCATCAT-GATCTGGAAGCCGTAGAAGCAGCGGGCCTCAGGGATCTGG 244725 Query 126407 ACCTCATCGGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAA 126466 ||||| | | || | | | ||||| ||||| ||||| || | ||||| Sbjct 244726 ACCTCGCCTGAGAAGCGCTCAACCAGGTTCTCGTTGACAATGCCATCTGAGGCGGCAAAG 244785 Query 126467 AACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAGTCG 126523 || || |||| | | ||||| | || ||| | || ||||| || | ||||||||| Sbjct 244786 AAGGCGAGGACGTGCGAGATGAAGTACTTTTCGTCCTTGTTCATGCGGTTGTTCCAGTCG 244845 Query 126524 TCAAGATCCTTCGAGAGATCTACCTCCTCCGCAGTCCA 126561 | |||||||| || ||||| | |||||| || ||||| Sbjct 244846 TGGAGATCCTTGGACAGATCAATCTCCTCGGCCGTCCA 244883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597353032514080