Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03- 01] 76 sequences; 29,468,565 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq5 116 4e-21 >seq5 Length=956377 Score = 116 bits (128), Expect = 4e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || || |||| || || || || ||||||||||| || | || ||||| |||| Sbjct 899648 AGAACCAGGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCCGAGAGCGTGCGACCGTCC 899707 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||||||||| ||||||| ||||||||||| ||||| || || || || || Sbjct 899708 TCGAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGGTCCGGAGGGATACCCTCCTTGTCC 899767 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| || | || || | ||||| || | ||| | |||| Sbjct 899768 TGAATCTTCGACTTCACATTGTCAATGGTGTCGGATGACTCCACCTCCAGAGTAATGGTC 899827 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||||| | ||| || || || || ||||| Sbjct 899828 TTGCCGGTAAGAGTCTTGACAAAGATCTGCAT 899859 Score = 98.7 bits (108), Expect = 1e-15 Identities = 146/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 |||||| || || | || || || || || |||||||| || | | ||||| |||| Sbjct 899875 AAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGGCCGTC 899934 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 |||||||||||||| ||| | || || |||||||| || |||||||| || || || || Sbjct 899935 CTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGATCCGGAGGAATGCCCTCCTTGTC 899994 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCG--TCCACTTCTACAGTTACG 64408 || || || ||| || || | |||| ||| || || ||||| | || | | Sbjct 899995 CTGGATCTTGGACTTGACGTTGTCGATGGTAT--CCGACGACTCGACTTCGAGGGTGATG 900052 Query 64409 GTCTTGCCGGTCAAAGTTTTTACGA 64433 ||||||||||||| || || |||| Sbjct 900053 GTCTTGCCGGTCAGGGTCTTGACGA 900077 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| || || || |||||||| || | || ||||| |||| || |||||||| || Sbjct 899435 GTCGACTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGACCGTCCTCCAGCTGCTTACCA 899494 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || || ||||||||||| || ||||| || || || || || || || ||| Sbjct 899495 GCAAAGATCAGACGCTGCTGGTCAGGGGGAATACCCTCCTTGTCCTGAATCTTGGACTTG 899554 Query 64367 ACAACCTCCACTGTATCACCGGCG--TCCACTTCTACAGTTACGGTCTTGCCGGTCAAAG 64424 || || | |||| ||| || || || || | || | ||||||||| |||| | Sbjct 899555 ACGTTGTCAATGGTAT--CCGACGACTCAACCTCCAGCGTAATGGTCTTGCCAGTCAGCG 899612 Query 64425 TTTTTACGAAAATTTGCAT 64443 | || || || || ||||| Sbjct 899613 TCTTGACAAAGATCTGCAT 899631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499644325337440