Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03-
01] 76 sequences; 29,468,565 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq5 116 4e-21
>seq5
Length=956377
Score = 116 bits (128), Expect = 4e-21
Identities = 153/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
|| || || |||| || || || || ||||||||||| || | || ||||| ||||
Sbjct 899648 AGAACCAGGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCCGAGAGCGTGCGACCGTCC 899707
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
|| |||||||||||||| ||||||| ||||||||||| ||||| || || || || ||
Sbjct 899708 TCGAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGGTCCGGAGGGATACCCTCCTTGTCC 899767
Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411
|| || || ||| ||| || | || || | ||||| || | ||| | ||||
Sbjct 899768 TGAATCTTCGACTTCACATTGTCAATGGTGTCGGATGACTCCACCTCCAGAGTAATGGTC 899827
Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|||||||| | ||| || || || || |||||
Sbjct 899828 TTGCCGGTAAGAGTCTTGACAAAGATCTGCAT 899859
Score = 98.7 bits (108), Expect = 1e-15
Identities = 146/205 (71%), Gaps = 4/205 (2%)
Strand=Plus/Plus
Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290
|||||| || || | || || || || || |||||||| || | | ||||| ||||
Sbjct 899875 AAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGGCCGTC 899934
Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350
|||||||||||||| ||| | || || |||||||| || |||||||| || || || ||
Sbjct 899935 CTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGATCCGGAGGAATGCCCTCCTTGTC 899994
Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCG--TCCACTTCTACAGTTACG 64408
|| || || ||| || || | |||| ||| || || ||||| | || | |
Sbjct 899995 CTGGATCTTGGACTTGACGTTGTCGATGGTAT--CCGACGACTCGACTTCGAGGGTGATG 900052
Query 64409 GTCTTGCCGGTCAAAGTTTTTACGA 64433
||||||||||||| || || ||||
Sbjct 900053 GTCTTGCCGGTCAGGGTCTTGACGA 900077
Score = 87.8 bits (96), Expect = 2e-12
Identities = 140/199 (70%), Gaps = 4/199 (2%)
Strand=Plus/Plus
Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306
||||| || || || |||||||| || | || ||||| |||| || |||||||| ||
Sbjct 899435 GTCGACTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGACCGTCCTCCAGCTGCTTACCA 899494
Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366
||| | || || ||||||||||| || ||||| || || || || || || || |||
Sbjct 899495 GCAAAGATCAGACGCTGCTGGTCAGGGGGAATACCCTCCTTGTCCTGAATCTTGGACTTG 899554
Query 64367 ACAACCTCCACTGTATCACCGGCG--TCCACTTCTACAGTTACGGTCTTGCCGGTCAAAG 64424
|| || | |||| ||| || || || || | || | ||||||||| |||| |
Sbjct 899555 ACGTTGTCAATGGTAT--CCGACGACTCAACCTCCAGCGTAATGGTCTTGCCAGTCAGCG 899612
Query 64425 TTTTTACGAAAATTTGCAT 64443
| || || || || |||||
Sbjct 899613 TCTTGACAAAGATCTGCAT 899631
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499644325337440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |