Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03- 01] 76 sequences; 29,468,565 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq53 269 3e-67 >seq53 Length=159929 Score = 269 bits (298), Expect = 3e-67 Identities = 621/925 (67%), Gaps = 18/925 (2%) Strand=Plus/Minus Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774 || ||| | ||||||| |||||| || |||||| |||||||| | ||| |||| ||| Sbjct 99577 AACTACCAGTACTTTGGCTTCAAGACCCTGGAGCGCTCGTACCTGTTGAAGCTGGACGGC 99518 Query 93775 AGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCAC 93834 | | || |||||| || || || || | ||||| || || | || || ||| || Sbjct 99517 AAGATTGTCGAGCGTCCCCAGCACATGATTATGCGTGTGGCTGTTGGCATCTGGGGCGAC 99458 Query 93835 GACATGCCGAATGTTT--TGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGG 93892 | | | ||| | | | | | | || |||| | |||| | ||| | Sbjct 99457 -AGA-GTCGATCGCGTCATTGAGACGTACAACCTCATGTCGAGCAAGTTCTTCACCCATG 99400 Query 93893 CCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGA 93952 || | || || ||||||||||| || || || | | ||| |||| || || |||||| Sbjct 99399 CCTCGCCCACGCTGTTCAACGCTGGTACGCCCCAGGCCCAGCTGTCGTCTTGCTTCCTGG 99340 Query 93953 T-GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011 | ||| | |||| ||||| || || |||| ||| | ||||||| |||||| | Sbjct 99339 TCGAC-ATGAAGGAGGACTCGATTGAGGGCATTTACGATACCCTCAAGACCTGTGCTATG 99281 Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071 ||||| || ||||| || ||||| ||| ||||||| | | || |||| ||| || Sbjct 99280 ATCTCCAAGATGGCGGGTGGTATCGGTCTCAATGTCCACCGCATCCGCGCCACGGGCTCG 99221 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 ||||| ||| ||||| || |||||||||||| || | || ||||| || || || ||| Sbjct 99220 TACATTGCCGGCACCAACGGTACCTCCAACGGCATCATTCCCATGCTGCGTGTGTTTAAC 99161 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 ||| | || |||||||| ||||||||||| | | | ||| | || || | || Sbjct 99160 AACACTGCCCGCTACGTCGACCAGGGTGGCAACAAGCGCCCCGGTGCCTTTGCCATTTAC 99101 Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAAC 94251 || ||||| |||||||| || ||| | ||| | |||||||| |||||||||||||| Sbjct 99100 CTGGAGCCGTGGCACGCCGATGTGTTTGAGTTCCTTGACCTGCGCAAGAACCACGGCAAG 99041 Query 94252 GATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAA 94311 || || | ||| | || || ||| ||||| ||| | || ||||| || ||||| Sbjct 99040 GAAGAGGTTCGCGCCCGTGATCTTTTCCTGGCTCTGTGGATCCCTGACCTGTTCATGAAG 98981 Query 94312 CGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCC 94371 || |||||||| ||| | | ||||| ||| | || ||||| || || || || ||| || Sbjct 98980 CGTGTCGAGAAGAACGCTGACTGGACTCTGATGTGCCCCAACGAGTGCCCTGGCCTGGCC 98921 Query 94372 GACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCC 94431 ||| | || | ||||| | |||| | ||||| ||||| | |||| Sbjct 98920 GACTGCTACGGCGAGGAGTTTGAGGCGCTGTACGAAAAGTACGA---GCAGG--AGGGCC 98866 Query 94432 AGGAAGGT-----TATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGG 94486 | || || | || |||||||||| | || |||| | ||| | Sbjct 98865 GCGGTCGTGCCTCGATCAAGGCCCAGAAGCTGTGGTACGCCATTCTGGAGGCGCAGACCG 98806 Query 94487 AGACGGGTACGCCCTACATCTTGTTCAAGGA-CTCTGTCAACGCCAAGTCCAACCAGCAG 94545 |||| || | || | ||| ||| |||||| | ||| |||| |||| ||||||| || Sbjct 98805 AGACTGGCAACCCGTTCATGCTGTACAAGGACCACTG-CAACCGCAAGAGCAACCAGAAG 98747 Query 94546 CACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCG 94605 |||| || ||| ||||| || |||||||| |||||| ||||||| | | ||| Sbjct 98746 AACCTGGGCACCATCCGCAGCTCCAACCTGTGCACGGAGATTATCGAGTACTGTGCGCCG 98687 Query 94606 GACGAGATTGCTGTGTGTAACCTGG 94630 || ||| |||| ||||| ||||||| Sbjct 98686 GATGAGGTTGCCGTGTGCAACCTGG 98662 Score = 145 bits (160), Expect = 8e-30 Identities = 264/383 (69%), Gaps = 4/383 (1%) Strand=Plus/Minus Query 94993 CAGGGCATTTTTCAGTTCGACCTCTGGGGTGTGAAGCCCTCGGGTCTGTACGACTGGGAA 95052 ||||||||| | ||||| ||| | ||| || | |||| | || | ||||||| | Sbjct 98311 CAGGGCATTCTGCAGTTTGACATGTGGAACGTCACGCCCAGCGACCTCTGGGACTGGGCA 98252 Query 95053 --GCTCTACGCGCTGATGTTATCAAACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCA 95110 |||| | | || ||| | || || |||||| ||| ||||||| | || || | Sbjct 98251 TCGCTCAAGGAGCAGATCA-AGCAG-CATGGTGTGCGCAACTCGCTGCTGCTTGCGCCGA 98194 Query 95111 TGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCT 95170 |||| |||||| |||| ||||||| || ||||||||||||| ||||| || | || | Sbjct 98193 TGCCGACGGCCAGCACGTCGCAGATTCTGGGCAACAACGAGTGCTTCGAGCCGTATACTT 98134 Query 95171 CCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCCCCGTCATCAACAAGCACCTCC 95230 ||||| | ||| | | || ||||| || || || |||| || ||||| | || | Sbjct 98133 CCAACATTTACCAGCGCCGTGTGCTGGCTGGCGAGTTCCAGGTTGTCAACCCGTGGCTGC 98074 Query 95231 TACGGGACCTGACGTCTCTGGGTGTGTGGGGTGACAAGGTCAAGAACCAACTGCTACGCG 95290 | || ||| || | |||||| ||||| || || | ||||||| | | | Sbjct 98073 TGCGCGACTTGGTGGACCTGGGTCTGTGGTCGGATAACATGAAGAACCGCATCATTGCGG 98014 Query 95291 CCAACGGCTCCGTCCAGAACATCCCGCAAATACCGGAGGACATCAAGGCGCTCTACAAGA 95350 ||||| || |||||||||| || || || || ||||||||| ||| ||||||| Sbjct 98013 AGAACGGGTCGATCCAGAACATTCCCAGCATCCCCGATGACATCAAGATGCTGTACAAGA 97954 Query 95351 CCGTGTGGGAGATCCCGCAGCGC 95373 | ||||||||||| |||||||| Sbjct 97953 CGGTGTGGGAGATTTCGCAGCGC 97931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494722730012960