Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03- 01] 76 sequences; 29,468,565 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq18 167 2e-36 seq5 122 9e-23 seq15 95.1 1e-14 >seq18 Length=597235 Score = 167 bits (184), Expect = 2e-36 Identities = 312/452 (69%), Gaps = 15/452 (3%) Strand=Plus/Minus Query 52392 GCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCC 52451 ||| ||||| |||||||||| ||| ||||||||| | || || |||||| ||||||| Sbjct 244520 GCCCAGCGCCTGGTGGCCTTTGCCGCCGTCGAGGGCATCTTCTTCTCCGGCGCCTTTGCC 244461 Query 52452 GCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTG 52511 |||| || | | | | || | |||||||||||||| || ||||||| || Sbjct 244460 TCCATTTTCTGGCTGCGCAAGCGTGGTCTGATGCCCGGCCTGACCTTTTCCAACGAGCTG 244401 Query 52512 ATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACGCGCGTG 52571 || ||||||||||| || |||||||| |||||||| ||||| || | ||| | Sbjct 244400 ATTTCGCGCGACGAGGGCCTGCACACCGACTTTGCCTGCCTGCTCTTC---TCGCAC--- 244347 Query 52572 ACCGAAAAATTGGATTCG-GACACGATC-CTGAG--CATGTTCAAGGAGGCGGTGGCTAT 52627 | ||| || | | | | | || |||| || ||| || || || | || Sbjct 244346 -CTGAACAACCGCCCCAGCAAGAAGCTCATTGAGGAAATCATCACTGATGCCGTCGTCAT 244288 Query 52628 CGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTC 52687 || |||||||| | || | || ||||| || ||||| ||||||||||| | Sbjct 244287 TGAGAAGGAGTTCCTGACTGAGGCCCTGCCCTGCGCCCTGCTCGGCATGAACGCCGACCT 244228 Query 52688 CATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCAAA 52747 |||| ||||||| |||||||| || || |||||| ||||| ||||| | ||| Sbjct 244227 CATGAAGCAGTACATTGAGTTTGTCGCCGACCGTCTGCTGGTGGCCCTCGGCAACGAAAA 244168 Query 52748 GTACTTCAACGCTC--GCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAG 52805 | || | ||||| || || ||||| |||||| | ||||| ||||| | |||||| Sbjct 244167 GGTCT--ACCGCTCCACGAACCCCTTTGACTTTATGGAGAACATCTCGCTCGGTGGCAAG 244110 Query 52806 ACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 |||||||| || |||||||| || ||||| || Sbjct 244109 ACCAACTTCTTTGAGAAGCGTGTTGGCGACTA 244078 >seq5 Length=956377 Score = 122 bits (134), Expect = 9e-23 Identities = 167/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| ||||| ||| || || | | |||||||| || |||||||||||| Sbjct 899404 GCCACCACGCAGACGCAGAACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGA 899463 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || || |||||| || || ||||| | | |||| |||||||| ||||| || || Sbjct 899464 GAGCGTGCGACCGTCCTCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCAGGGGG 899523 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCC 138564 ||||| || ||||| ||| | || | || | ||| || | ||| || | |||||| Sbjct 899524 AATACCCTCCTTGTC-CTGAATCTTGGACTTGACGTTG-TCAATGGTATCCGACGACTCA 899581 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| | ||| | || || |||||||| || || ||||| |||||||| Sbjct 899582 ACCTCCAGCGTAATGGTCTTGCCAGTCAGCGTCTTGACAAAGATCTGCAT 899631 Score = 114 bits (126), Expect = 1e-20 Identities = 145/196 (74%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| |||||||||||||| | || || ||||||||| || || |||| Sbjct 899666 GACTCCTTCTGAATGTTGTAGTCCGAGAGCGTGCGACCGTCCTCGAGCTGCTTGCCGGCG 899725 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG--TTTTA 138538 | || |||||||| ||||||||||| ||||| || ||||| ||| | || | || Sbjct 899726 AAAATGAGACGCTGCTGGTCCGGAGGGATACCCTCCTTGTC-CTGAATCTTCGACTTCAC 899784 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| || | |||||||| ||||||||||| | || | || || || || ||||| | Sbjct 899785 ATTG-TCAATGGTGTCGGATGACTCCACCTCCAGAGTAATGGTCTTGCCGGTAAGAGTCT 899843 Query 138599 TTACAAAAATCTGCAT 138614 | ||||| |||||||| Sbjct 899844 TGACAAAGATCTGCAT 899859 Score = 89.7 bits (98), Expect = 5e-13 Identities = 146/207 (71%), Gaps = 4/207 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||||| || | || | | | |||||||| || ||||||||||| | Sbjct 900146 CCACCACGCAGACGCAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 900205 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || |||||| || || || || | | |||| |||||||| || |||||||| Sbjct 900206 AGAGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCCGGAGGA 900265 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 ||||| || ||||| ||| | || | || | ||| || | ||||||| || |||| Sbjct 900266 ATACCCTCCTTGTC-CTGAATCTTGGACTTGACGTTG-TCGATAGTGTCGGAAGATTCCA 900323 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCA 138592 |||| | || | || || || |||| Sbjct 900324 CCTCAAGGGTGATGGTCTTGCCCGTCA 900350 >seq15 Length=634592 Score = 95.1 bits (104), Expect = 1e-14 Identities = 137/191 (72%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 138425 CCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGA 138484 |||| || |||||||||||| || ||| || ||||| || || || || | ||| Sbjct 108844 CCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGA 108785 Query 138485 TTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGT 138543 | || ||||| || ||||| || || || || ||||| ||| || || | ||||| Sbjct 108784 TCAGGCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 108725 Query 138544 TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACA 138603 | | |||||| | ||||| ||||||| || | ||| ||||| ||||| || || || Sbjct 108724 -CGATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTCAGGGTCTTGACG 108666 Query 138604 AAAATCTGCAT 138614 ||||||||||| Sbjct 108665 AAAATCTGCAT 108655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496261928550720