Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03-
01] 76 sequences; 29,468,565 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq18 179 4e-40
seq15 123 2e-23
seq5 122 8e-23
seq27 105 6e-18
>seq18
Length=597235
Score = 179 bits (198), Expect = 4e-40
Identities = 371/543 (68%), Gaps = 23/543 (4%)
Strand=Plus/Minus
Query 47046 CTTTTGAACGGTTTCGAGAGCATGCCCTGCGTGCGCAGAAAGGCCGAGTGGGCCATGAAG 47105
|| || |||| |||| | ||| |||||| | ||| | |||||||| |||||| | |||
Sbjct 244607 CTGTTCAACGCCATCGACACCATTCCCTGCATCCGCCGCAAGGCCGACTGGGCCCTCAAG 244548
Query 47106 TACATTGAAAACGAAAACGTC-ACTCTGGCCGAACGTTTGATCGCTTTCGCCATCGTCGA 47164
| |||| || | | ||| || | ||| | || || | || || ||| ||||||
Sbjct 244547 TGGATTGCCGACCACGA-GTCGACCTTTGCCCAGCGCCTGGTGGCCTTTGCCGCCGTCGA 244489
Query 47165 GGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATATTTTACATGAAAACCAAAGGAGTTAT 47224
|||| |||||||||| ||| |||||| | || || | || | || | ||
Sbjct 244488 GGGCATCTTCTTCTCCGGCGCCTTTGCCTCCATTTTCTGGCTGCGCAAGCGTGGTCTGAT 244429
Query 47225 GCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACACCAACTT 47284
||||||||| || ||| ||||||||| || ||| | ||||| |||||||||||| ||||
Sbjct 244428 GCCCGGCCTGACCTTTTCCAACGAGCTGATTTCGCGCGACGAGGGCCTGCACACCGACTT 244369
Query 47285 TGCCTGTCT---CTACTA-CAACACTAGAGTCGATCAAAAGTTGGACGTGCCCACCGTCA 47340
|||||| || || || || | | | || | | | || | | | | |
Sbjct 244368 TGCCTGCCTGCTCTTCTCGCACCTGAACAACCGCCCCA--GCAAGAAG----CTCATTGA 244315
Query 47341 GCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCG 47400
| || || | | || ||||||| |||||||| |||||| | | ||||| ||||||
Sbjct 244314 G-GAAATCATCACTGATGCCGTCGTCATTGAGAAGGAGTTCCTGACTGAGGCCCTGCCCT 244256
Query 47401 AATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACC 47460
| | | || |||||||| || | |||| ||||||| || |||||||||||||
Sbjct 244255 GCGCCCTGCTCGGCATGAACGCCGACCTCATGAAGCAGTACATTGAGTTTGTCGCCGACC 244196
Query 47461 GCCTGCTCGT-----TCAGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGA 47515
| ||||| || || || || | | ||| | |||| | || ||| || || ||
Sbjct 244195 GTCTGCTGGTGGCCCTCGGC-AACGAA----AAGGTCTACCGCTCCACGAACCCCTTTGA 244141
Query 47516 GTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGA 47575
|||||| | ||||| ||||||| |||||||||||||| || |||||||| || |||||
Sbjct 244140 CTTTATGGAGAACATCTCGCTCGGTGGCAAGACCAACTTCTTTGAGAAGCGTGTTGGCGA 244081
Query 47576 ATA 47578
||
Sbjct 244080 CTA 244078
>seq15
Length=634592
Score = 123 bits (136), Expect = 2e-23
Identities = 140/188 (74%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985
|| || || ||||| ||| || ||||| ||| || ||||| || |||||| |||||
Sbjct 108842 TTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 108783
Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045
| ||||||||||| || || ||||||||||||||| ||| || ||||| | |||
Sbjct 108782 AGGCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 108723
Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105
| |||||||| ||| || |||| ||| | ||| || || ||||| || || || |||
Sbjct 108722 ATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTCAGGGTCTTGACGAAA 108663
Query 127106 ATCTGCAT 127113
||||||||
Sbjct 108662 ATCTGCAT 108655
>seq5
Length=956377
Score = 122 bits (134), Expect = 8e-23
Identities = 158/216 (73%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | || | ||||| || | || ||||| || || || ||||| || |
Sbjct 899861 CCACCACGGAGACGAAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 899920
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||| || || ||||| || ||||| |||||| ||||||||||| |||||
Sbjct 899921 AGAGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGATCCGGAGGA 899980
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065
||||||||||||||| ||| || ||||| |||| |||| ||| |||| ||||||
Sbjct 899981 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTG-TCGATGGTATCCGACGACTCGAC 900039
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 127101
||||| ||| | || ||||||||||| || || ||
Sbjct 900040 TTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTGAC 900075
Score = 107 bits (118), Expect = 2e-18
Identities = 162/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | |||| ||||| || | || ||||| || || || ||||| |||
Sbjct 899405 CCACCACGCAGACGCAGAACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAG 899464
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||||| || || ||||| || ||||| |||||| |||||||| || || ||
Sbjct 899465 AGCGTGCGACCGTCCTCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCAGGGGGA 899524
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065
|| |||||||||||| || || ||||| |||| || | ||| |||| ||| ||
Sbjct 899525 ATACCCTCCTTGTCCTGAATCTTGGACTTGACGTTG-TCAATGGTATCCGACGACTCAAC 899583
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| | || | || ||||| ||||| || || ||||| ||||||||
Sbjct 899584 CTCCAGCGTAATGGTCTTGCCAGTCAGCGTCTTGACAAAGATCTGCAT 899631
Score = 98.7 bits (108), Expect = 9e-16
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|||||||| || ||||| ||||| || | ||||||| || || ||||| || ||
Sbjct 899663 GTAGACTCCTTCTGAATGTTGTAGTCCGAGAGCGTGCGACCGTCCTCGAGCTGCTTGCCG 899722
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| | || | |||||||| || ||||| || |||||||||||| || ||| |||
Sbjct 899723 GCGAAAATGAGACGCTGCTGGTCCGGAGGGATACCCTCCTTGTCCTGAATCTTCGACTTC 899782
Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096
| | || | |||||| | ||| || || | || | || |||||||| |||||
Sbjct 899783 ACATTGTCAATGGTGTCGGATGACTCCACCTCCAGAGTAATGGTCTTGCCGGTAAGAGTC 899842
Query 127097 TTTACAAAAATCTGCAT 127113
|| ||||| ||||||||
Sbjct 899843 TTGACAAAGATCTGCAT 899859
>seq27
Length=468876
Score = 105 bits (116), Expect = 6e-18
Identities = 137/187 (73%), Gaps = 2/187 (1%)
Strand=Plus/Plus
Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985
|| ||||| ||||| ||| || ||||| ||| || ||||| || |||||| |||||
Sbjct 115676 TTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATC 115735
Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTC 127044
| |||||||| || || || ||||||||||||||| ||| || ||||| |||| ||
Sbjct 115736 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTG-TC 115794
Query 127045 GACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 127104
|| ||||||| |||||| || | ||| | || || || ||||| || || || ||
Sbjct 115795 GATCGTGTCCGAGGACTCGACCTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAA 115854
Query 127105 AATCTGC 127111
| | |||
Sbjct 115855 ACTGTGC 115861
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475500348274240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |