Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03- 01] 76 sequences; 29,468,565 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq18 179 4e-40 seq15 123 2e-23 seq5 122 8e-23 seq27 105 6e-18 >seq18 Length=597235 Score = 179 bits (198), Expect = 4e-40 Identities = 371/543 (68%), Gaps = 23/543 (4%) Strand=Plus/Minus Query 47046 CTTTTGAACGGTTTCGAGAGCATGCCCTGCGTGCGCAGAAAGGCCGAGTGGGCCATGAAG 47105 || || |||| |||| | ||| |||||| | ||| | |||||||| |||||| | ||| Sbjct 244607 CTGTTCAACGCCATCGACACCATTCCCTGCATCCGCCGCAAGGCCGACTGGGCCCTCAAG 244548 Query 47106 TACATTGAAAACGAAAACGTC-ACTCTGGCCGAACGTTTGATCGCTTTCGCCATCGTCGA 47164 | |||| || | | ||| || | ||| | || || | || || ||| |||||| Sbjct 244547 TGGATTGCCGACCACGA-GTCGACCTTTGCCCAGCGCCTGGTGGCCTTTGCCGCCGTCGA 244489 Query 47165 GGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATATTTTACATGAAAACCAAAGGAGTTAT 47224 |||| |||||||||| ||| |||||| | || || | || | || | || Sbjct 244488 GGGCATCTTCTTCTCCGGCGCCTTTGCCTCCATTTTCTGGCTGCGCAAGCGTGGTCTGAT 244429 Query 47225 GCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACACCAACTT 47284 ||||||||| || ||| ||||||||| || ||| | ||||| |||||||||||| |||| Sbjct 244428 GCCCGGCCTGACCTTTTCCAACGAGCTGATTTCGCGCGACGAGGGCCTGCACACCGACTT 244369 Query 47285 TGCCTGTCT---CTACTA-CAACACTAGAGTCGATCAAAAGTTGGACGTGCCCACCGTCA 47340 |||||| || || || || | | | || | | | || | | | | | Sbjct 244368 TGCCTGCCTGCTCTTCTCGCACCTGAACAACCGCCCCA--GCAAGAAG----CTCATTGA 244315 Query 47341 GCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCG 47400 | || || | | || ||||||| |||||||| |||||| | | ||||| |||||| Sbjct 244314 G-GAAATCATCACTGATGCCGTCGTCATTGAGAAGGAGTTCCTGACTGAGGCCCTGCCCT 244256 Query 47401 AATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACC 47460 | | | || |||||||| || | |||| ||||||| || ||||||||||||| Sbjct 244255 GCGCCCTGCTCGGCATGAACGCCGACCTCATGAAGCAGTACATTGAGTTTGTCGCCGACC 244196 Query 47461 GCCTGCTCGT-----TCAGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGA 47515 | ||||| || || || || | | ||| | |||| | || ||| || || || Sbjct 244195 GTCTGCTGGTGGCCCTCGGC-AACGAA----AAGGTCTACCGCTCCACGAACCCCTTTGA 244141 Query 47516 GTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGA 47575 |||||| | ||||| ||||||| |||||||||||||| || |||||||| || ||||| Sbjct 244140 CTTTATGGAGAACATCTCGCTCGGTGGCAAGACCAACTTCTTTGAGAAGCGTGTTGGCGA 244081 Query 47576 ATA 47578 || Sbjct 244080 CTA 244078 >seq15 Length=634592 Score = 123 bits (136), Expect = 2e-23 Identities = 140/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || || || ||||| ||| || ||||| ||| || ||||| || |||||| ||||| Sbjct 108842 TTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 108783 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 | ||||||||||| || || ||||||||||||||| ||| || ||||| | ||| Sbjct 108782 AGGCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 108723 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 | |||||||| ||| || |||| ||| | ||| || || ||||| || || || ||| Sbjct 108722 ATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTCAGGGTCTTGACGAAA 108663 Query 127106 ATCTGCAT 127113 |||||||| Sbjct 108662 ATCTGCAT 108655 >seq5 Length=956377 Score = 122 bits (134), Expect = 8e-23 Identities = 158/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | || ||||| || || || ||||| || | Sbjct 899861 CCACCACGGAGACGAAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 899920 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || ||||| || ||||| |||||| ||||||||||| ||||| Sbjct 899921 AGAGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGATCCGGAGGA 899980 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| ||| || ||||| |||| |||| ||| |||| |||||| Sbjct 899981 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTG-TCGATGGTATCCGACGACTCGAC 900039 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 127101 ||||| ||| | || ||||||||||| || || || Sbjct 900040 TTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTGAC 900075 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| ||||| || | || ||||| || || || ||||| ||| Sbjct 899405 CCACCACGCAGACGCAGAACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAG 899464 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||||| || || ||||| || ||||| |||||| |||||||| || || || Sbjct 899465 AGCGTGCGACCGTCCTCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCAGGGGGA 899524 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||||||| || || ||||| |||| || | ||| |||| ||| || Sbjct 899525 ATACCCTCCTTGTCCTGAATCTTGGACTTGACGTTG-TCAATGGTATCCGACGACTCAAC 899583 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || ||||| ||||| || || ||||| |||||||| Sbjct 899584 CTCCAGCGTAATGGTCTTGCCAGTCAGCGTCTTGACAAAGATCTGCAT 899631 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| || ||||| ||||| || | ||||||| || || ||||| || || Sbjct 899663 GTAGACTCCTTCTGAATGTTGTAGTCCGAGAGCGTGCGACCGTCCTCGAGCTGCTTGCCG 899722 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | || | |||||||| || ||||| || |||||||||||| || ||| ||| Sbjct 899723 GCGAAAATGAGACGCTGCTGGTCCGGAGGGATACCCTCCTTGTCCTGAATCTTCGACTTC 899782 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | |||||| | ||| || || | || | || |||||||| ||||| Sbjct 899783 ACATTGTCAATGGTGTCGGATGACTCCACCTCCAGAGTAATGGTCTTGCCGGTAAGAGTC 899842 Query 127097 TTTACAAAAATCTGCAT 127113 || ||||| |||||||| Sbjct 899843 TTGACAAAGATCTGCAT 899859 >seq27 Length=468876 Score = 105 bits (116), Expect = 6e-18 Identities = 137/187 (73%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || ||||| ||||| ||| || ||||| ||| || ||||| || |||||| ||||| Sbjct 115676 TTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATC 115735 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTC 127044 | |||||||| || || || ||||||||||||||| ||| || ||||| |||| || Sbjct 115736 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTG-TC 115794 Query 127045 GACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 127104 || ||||||| |||||| || | ||| | || || || ||||| || || || || Sbjct 115795 GATCGTGTCCGAGGACTCGACCTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAA 115854 Query 127105 AATCTGC 127111 | | ||| Sbjct 115855 ACTGTGC 115861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475500348274240