Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03- 01] 76 sequences; 29,468,565 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq53 187 3e-42 seq18 145 9e-30 >seq53 Length=159929 Score = 187 bits (206), Expect = 3e-42 Identities = 853/1337 (64%), Gaps = 27/1337 (2%) Strand=Plus/Plus Query 115864 TTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGC 115923 |||||||| ||||| || || || || | | | || ||||||| || || ||| Sbjct 98085 TTGACAACCTGGAACTCGCCAGCCAGCACACGGCGCTGGTAAATGTTGGAAGTATACGGC 98144 Query 115924 TCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATG 115983 || |||||||| ||||| |||| || || | ||| ||| || ||||| || || | Sbjct 98145 TCGAAGCACTCGTTGTTGCCCAGAATCTGCGACGTGCTGGCCGTCGGCATCGGCGCAAGC 98204 Query 115984 AGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAG 116043 || || |||||| | ||| | | | || | |||||||| | ||||||| || Sbjct 98205 AGCAGCGAGTTGCGCACACCATGCTGCTTGATCTGCTCCTTGAGCGATGCCCAGTCCCAG 98264 Query 116044 TTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGAT 116103 | | | | | | |||||| |||||||| || || || ||||| | ||||| Sbjct 98265 AGGTCGCTGGGCGTGACGTTCCACATGTCAAACTGCAGAATGCCCTGGGAAACAGGCGAG 98324 Query 116104 CCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCT 116163 ||||| | || || | ||||| ||| ||| | || |||| || || Sbjct 98325 CCCTCGTACGTAGAGTACGTTCCCTCCTCCTGCGCAATCTCCATCGACGCCGTCAGAGCA 98384 Query 116164 GCGTGATACATTGTCTCAAAAATGCGAGCATTCA--TTGCCTTGGCCTCGTCGGAATCAA 116221 ||||| || || |||||||| || | | || | |||| |||||| | || |||| Sbjct 98385 GCGTGGTAGATGGTCTCAAAGATTTGCGTGTTGAGCTTGCGA--GCCTCGGCCGACTCAA 98442 Query 116222 ACGCGAGACG--GCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGG 116279 | | | || || | || || ||||||| || || |||||||| | ||||| || Sbjct 98443 AAGGCATGCGAAGCGCCAAG--AAGGCATCCGCCAGGCCCTGGACACCAACACCAATAGG 98500 Query 116280 GCGATGTCTCATATTAGACTTTCGAGCGGTCTC---CACGGGATAAAAATTCCTATCGAT 116336 ||| || | ||| || || | || ||| |||||| || || || || Sbjct 98501 GCGGTGGCGCATGTTGCTGTTCTGCGC---CTCGGGCACGGGGTAGTGGTTGACGTCAAT 98557 Query 116337 AACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAA 116396 | | || || || || ||||| |||| || || ||||| | | | || | Sbjct 98558 GATGCGGTTCAGGTTGCGCACAACTACCTTGGTGACCTCGTGCAGCTTCTGGAAGTCGTA 98617 Query 116397 ACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGA 116456 | | | | | |||| || || || || | || ||||| || ||||| | Sbjct 98618 CTCGTTCTTGTTGTAGTCGACAAACGACGGCAGAGCCAGCGAAGCCAGGTTGCACACGGC 98677 Query 116457 GGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGT 116516 ||||||| || |||||| ||||| ||||| |||| || || || ||||| Sbjct 98678 AACCTCATCCGGCGCACAGTACTCGATAATCTCCGTGCACAGGTTGGAGCTGCGGATGGT 98737 Query 116517 GCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGT 116576 ||||| |||||| || || ||| ||| || |||||||| ||||| | || | Sbjct 98738 GCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTACAGCATGAACGGGTT 98797 Query 116577 CCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAGTGG 116635 || ||||| || || | || ||||| || | ||| | | || | | || | | | || Sbjct 98798 GCCAGTCTCGGTCTGCGCCTCCAGAATGGCGTACCACAGCTTCTGGGCCTTGATC-GAGG 98856 Query 116636 CGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAG 116695 | | || ||||||| |||||||||| ||| || ||||||||||| || || || Sbjct 98857 CACGACCGCGGCCCTCCTGCTCGTACTTTTCGTACAGCGCCTCAAACTCCTCGCCGT-AG 98915 Query 116696 CC-TCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCA 116754 | || | || || || || | || || | |||| ||| | | | || ||| Sbjct 98916 CAGTCGGCCAGGCCAGGGCACTCGTTGGGGCACATCAGAGTCCAGTCAGCGTTCTTCTCG 98975 Query 116755 ACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCT 116814 || ||||||||||| ||||| |||||||| || ||| ||| ||||| || |||| | Sbjct 98976 ACACGCTTCATGAACAGGTCAGGGATCCACAGAGCCAGGAAAAGATCACGGGCGCGAACC 99035 Query 116815 TCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGT 116874 ||||| | || || || |||| || | || || | | ||| ||||||||||| Sbjct 99036 TCTTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAACTCAAACACATCGGCGTGCCACGGC 99095 Query 116875 TCCAGGTACACCGCGATTGACCCCTTGCG---ACGACCAGCCTGGTTTACATACCTCGCC 116931 |||||||| | || | | || ||| ||| |||||| || || | || Sbjct 99096 TCCAGGTAAATGGCAAAGGCACCGGGGCGCTTGTTGCCACCCTGGTCGACGTAGCGGGCA 99155 Query 116932 GTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGA 116991 || |||||| || || ||||| |||||||| || | || || || || || | Sbjct 99156 GTGTTGTTAAACACACGCAGCATGGGAATGATGCCGTTGGAGGTACCGTTGGTGCCGGCA 99215 Query 116992 A--TACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACT 117049 | |||||| | |||| | || ||||| | | ||| ||||| || ||| || Sbjct 99216 ATGTACGAGCC--CGTGGCGCGGATGCGGTGGACATTGAGACCGATACCACCCGCCATCT 99273 Query 117050 TTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTAT 117109 | ||||| || || | |||| | |||| || || || |||||||| |||| Sbjct 99274 TGGAGATCATAGCACAGGTCTTGAGGGTATCGTAAATGCCCTCAATCGAGTCCTCCTTCA 99333 Query 117110 TTGCGATGAGGAAGCAGCTCGACATTTGTGGCCT-TGGTGTACCAGCGTTGAAGAGGGTT 117168 | ||| |||||||| ||||| || ||||| || |||||||||||||| || || Sbjct 99334 TGTCGACCAGGAAGCAAGACGACAGCTG-GGCCTGGGGCGTACCAGCGTTGAACAGCGTG 99392 Query 117169 GGTGTCGCGTGGATGAA 117185 || | || ||| |||| Sbjct 99393 GGCGAGGCATGGGTGAA 99409 >seq18 Length=597235 Score = 145 bits (160), Expect = 9e-30 Identities = 531/819 (65%), Gaps = 27/819 (3%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 |||||| || || |||||||| |||||||| ||||| ||| |||| ||| |||||||| Sbjct 244077 GTAGTCGCCAACACGCTTCTCAAAGAAGTTGGTCTTGCCACCGAGCGAGATGTTCTCCAT 244136 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAA-----TTGTTGGC-ACCCCAATCTGTTTGAG 127344 ||| ||||| |||||| | ||| | | | |||| | | | | | || Sbjct 244137 AAAGTCAAAGGGGTTCGTGGAGCGGTAGACCTTTTCGTTGCCGAGGGCCACC------AG 244190 Query 127345 GAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG 127404 ||||| || | ||| |||||||||||| ||| || | |||||| |||| || Sbjct 244191 CAGACGGTCGGCGACAAACTCAATGTACTGCTTCATGAGGTCGGCGTTCATGCCGAGCAG 244250 Query 127405 GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGAT 127464 | || || || || || | |||| ||||||||||| | || || || | ||| Sbjct 244251 GGCGCAGGGCAGGGCCTCAGTCAGGAACTCCTTCTCAATGACGACGGCATCAGTGATGAT 244310 Query 127465 GGCGTGAATAGTGTCCACCCCAGGTCTATTGCGTAAAGT-CTTGAAGAGTTCCA--CAG- 127520 | | ||| | | | || | ||| | | || | |||||| || ||| Sbjct 244311 TTCCTCAATGAGCTTCTTGCTGGGGCGGTTGT-TCAGGTGCGAGAAGAG---CAGGCAGG 244366 Query 127521 CAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTG 127580 |||| || ||| || |||||||| || || || || || || || ||| ||| || | Sbjct 244367 CAAAGTCGGTGTGCAGGCCCTCGTCGCGCGAAATCAGCTCGTTGGAAAAGGTCAGGCCGG 244426 Query 127581 GCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCC 127640 |||| ||||| ||||| || ||||||||| | ||| | ||| ||||||||||| | Sbjct 244427 GCATCAGACCACGCTTGCGCAGCCAGAAAATGGAGGCAAAGGCGCCGGAGAAGAAGATGC 244486 Query 127641 CCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGT-ATCAAAC 127699 |||| || || || || | || |||| |||||||| || | | || ||| | Sbjct 244487 CCTCGACGGCGGCAAAGGCCACCAGGCGCTGGGCAAAGG-TCGACTCGTGGTCGGCAATC 244545 Query 127700 CACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAG 127759 ||||| | ||||| | ||||| ||| || || | ||| | ||| || | || Sbjct 244546 CACTTGAGGGCCCAGTCGGCCTTGCGGCGGATGCAGGGAATGGTGTCGATGGCGTTGAAC 244605 Query 127760 AGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCG 127819 || | | | | || || ||||||||| | || ||||| || || || ||| Sbjct 244606 AGGTAGCTGCGCTGGGCGGGCTCCTTGATGTACGTGTCGATGAGCAGCGAGTACGTCTCG 244665 Query 127820 CCGTGGACCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTG 127878 ||||| | | ||| || | ||| | ||||||| |||| || || ||||| Sbjct 244666 GAGTGGATGTTCTCCATCAT-GATCTGGAAGCCGTAGAAGCAGCGGGCCTCAGGGATCTG 244724 Query 127879 TACCTCATCGGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAA 127938 ||||| | | || | | | ||||| ||||| ||||| || | ||||| Sbjct 244725 GACCTCGCCTGAGAAGCGCTCAACCAGGTTCTCGTTGACAATGCCATCTGAGGCGGCAAA 244784 Query 127939 AAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAGTC 127995 || || |||| | | ||||| | || ||| | || ||||| || | |||||||| Sbjct 244785 GAAGGCGAGGACGTGCGAGATGAAGTACTTTTCGTCCTTGTTCATGCGGTTGTTCCAGTC 244844 Query 127996 GTCGAGATCCTTTGAGAGATCTACCTCCTCCGCAGTCCA 128034 || ||||||||| || ||||| | |||||| || ||||| Sbjct 244845 GTGGAGATCCTTGGACAGATCAATCTCCTCGGCCGTCCA 244883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613506617168160